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riboseqr
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package ‘riboSeqR’ is not available for this version of R
Bioconductor
riboSeqR
2.5 years ago
Javier
• 0
0
votes
0
replies
778
views
Reference span vs. width of read in riboseqR
riboSeqR
5.5 years ago
ni2239
• 0
0
votes
1
reply
797
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riboSeqR readRibodata fail in IRanges
riboSeqR
6.1 years ago
Hui.Pan
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0
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2
replies
1.2k
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aroundPromoter function in RiboSeqR gives error
riboseqr
7.0 years ago
amir.mahboubi.79
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2
votes
3
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1.6k
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Problem in reading .bam files (aligned to transcriptome) with ribofileCR function
R
riboseqr
ribosome profiling
7.7 years ago
bsad
• 0
0
votes
3
replies
1.8k
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Error in frameCounting using riboSeqR
riboseq
R
riboseqr
8.2 years ago
yingyingguo0228
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1
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2
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2.0k
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error in frameCounting in riboSeqR
riboseqr
ribosome profiling
updated 9.6 years ago by
Thomas J Hardcastle
▴ 180 • written 9.7 years ago by
alper.celik
• 0
0
votes
2
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1.9k
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error in callingFrames : riboSeqR
R
riboseqr
ribosome profiling
10.0 years ago
ohtack9
• 0
1
vote
3
replies
1.6k
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error in loading Riboseq
software error
riboseqr
10.0 years ago
yyu
• 0
1
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0
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1.9k
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Job:
PhD Student in Computational Biology
differential gene expression
rnaseq
riboseqr
computational biology
Job
10.1 years ago
Bernd Fischer
▴ 550
0
votes
1
reply
1.3k
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riboSeqR: legend in plotFS
riboseqr
updated 10.5 years ago by
Thomas J Hardcastle
▴ 180 • written 10.5 years ago by
antonvila.s
• 0
0
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0
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1.2k
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legend in plotFS
riboseqr
10.5 years ago
antonvila.s
• 0
0
votes
1
reply
1.3k
views
riboSeqR: plotTranscript error
riboSeqR
updated 10.5 years ago by
Thomas J Hardcastle
▴ 180 • written 10.5 years ago by
antonvila.s
• 0
0
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0
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1.2k
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riboSeqR: questions on plotTranscript function
riboseqr
10.6 years ago
antonvila.s
• 0
0
votes
1
reply
1.5k
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riboSeqR: criteria used to determine reading frames
riboSeqR
updated 10.6 years ago by
Thomas J Hardcastle
▴ 180 • written 10.7 years ago by
antonvila.s
• 0
0
votes
1
reply
1.4k
views
riboSeqR: plotTranscript function not showing coverage
riboseqr
updated 10.6 years ago by
Thomas J Hardcastle
▴ 180 • written 10.7 years ago by
antonvila.s
• 0
0
votes
0
replies
1.6k
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riboSeqR: interpret plots generated by plotTranscript function
riboSeqR
plotTranscript function
11.0 years ago
Laura.Fancello
• 0
1
vote
3
replies
1.9k
views
RiboSeqR package input file format
riboSeqR
updated 11.0 years ago by
Thomas J Hardcastle
▴ 180 • written 11.0 years ago by
Laura.Fancello
• 0
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
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teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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