Bioconductor Rnaseqdtu

Showing : rnaseqdtu • reset

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3.0k

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tximport dtu salmon TPM rnaseqDTU

written 5.1 years ago by fiona.dick91 ▴ 60

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2.2k

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rnaseqDTU dtu

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by rbenel ▴ 40

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836

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rnaseqDTU

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by nicog • 0

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1.1k

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DTU DRIMSeq rnaseqDTU

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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1.3k

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DEXSeq rnaseqDTU

2.7 years ago rbenel ▴ 40

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1.2k

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rnaseqdtu

5.3 years ago rbenel ▴ 40

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1.6k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.3 years ago d-joester ▴ 20

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690

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rnaseqDTU DRIMSeq

22 months ago wangziwei0010 ▴ 10

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1.2k

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rnaseqdtu

4.8 years ago rbenel ▴ 40

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1.4k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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1.5k

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DEXSeq StageR rnaseqDTU

updated 5.5 years ago by Michael Love 41k • written 5.6 years ago by rbenel ▴ 40

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1.3k

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rnaseqDTU

2.1 years ago • updated 24 months ago ksong ▴ 10

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709

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by debatosh das ▴ 10

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614

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rnaseqDTU

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by rohitsatyam102 ▴ 20

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1.6k

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rnaseqDTU DRIMseq DEXseq rna-seq

5.1 years ago saddamhusain77 • 0

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1.0k

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drimseq rnaseqdtu stager

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by Jack.Hearn • 0

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1.2k

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

2.7 years ago bioinformatic_trainee ▴ 10

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707

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rnaseqDTU

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by dixit.anirudha • 0

18 results • Page 1 of 1

Recent ...

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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