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StatisticalMethod FoldChange edgeR RNASeq

4 months ago • updated 3 months ago Sabiha ▴ 20

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FoldChange DiffBind lfcShrink

updated 8 months ago by Rory Stark ★ 5.1k • written 9 months ago by bhandary.8590 ▴ 20

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785

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FoldChange DiffBind lfcShrink Cut&TagData

10 months ago • updated 9 months ago bhandary.8590 ▴ 20

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1.5k

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DESeq2 TPM Foldchange

updated 2.0 years ago by Michael Love 41k • written 2.0 years ago by dadca596 • 0

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877

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

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1.1k

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sign FoldChange DESeq2 reference

updated 2.3 years ago by Michael Love 41k • written 2.3 years ago by yampolsk • 0

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4.7k

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DifferentialExpression DEA FC FoldChange edgeR

2.6 years ago zhxiaokang ▴ 20

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2.3k

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EdgeR RNAseq Foldchange

updated 2.8 years ago by swbarnes2 ★ 1.3k • written 2.8 years ago by najib • 0

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2.3k

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foldchange topGO DifferentialExpression enrichment

updated 3.4 years ago by Gordon Smyth 50k • written 3.4 years ago by lessismore ▴ 20

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1.4k

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limma microarray foldchange DEG GEO

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Pietro ▴ 40

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1.3k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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1.4k

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limma RNAseq foldchange

5.2 years ago • updated 5.1 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Popular Question to James W. MacDonald 65k