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foldchange
•
reset
1
vote
2
replies
1.4k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
2.2 years ago
Sabiha
▴ 20
1
vote
1
reply
5.2k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 2.6 years ago by
Rory Stark
★ 5.3k • written 2.6 years ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.9k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
2.7 years ago
bhandary.8590
▴ 20
0
votes
2
replies
2.5k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
dadca596
• 0
0
votes
1
reply
1.5k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 4.1 years ago by
Gordon Smyth
53k • written 4.1 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.8k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
yampolsk
• 0
3
votes
5
replies
8.1k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
4.5 years ago
zhxiaokang
▴ 20
2
votes
9
replies
3.5k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 4.6 years ago by
swbarnes2
★ 1.4k • written 4.7 years ago by
najib
• 0
0
votes
7
replies
5.1k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 5.3 years ago by
Gordon Smyth
53k • written 5.3 years ago by
lessismore
▴ 20
4
votes
5
replies
2.2k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 6.0 years ago by
Gordon Smyth
53k • written 6.1 years ago by
Pietro
▴ 40
1
vote
1
reply
1.9k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 6.8 years ago by
Michael Love
43k • written 7.1 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
2.0k
views
Foldchange values Limma
limma
RNAseq
foldchange
7.0 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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