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foldchange
•
reset
1
vote
2
replies
1.0k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
17 months ago
Sabiha
▴ 20
1
vote
1
reply
5.0k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 22 months ago by
Rory Stark
★ 5.2k • written 22 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.5k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
23 months ago
bhandary.8590
▴ 20
0
votes
2
replies
2.2k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
dadca596
• 0
0
votes
1
reply
1.2k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 3.4 years ago by
Gordon Smyth
52k • written 3.4 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.6k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
yampolsk
• 0
3
votes
5
replies
7.2k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
3.7 years ago
zhxiaokang
▴ 20
2
votes
9
replies
3.1k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 3.9 years ago by
swbarnes2
★ 1.4k • written 3.9 years ago by
najib
• 0
0
votes
7
replies
4.3k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 4.5 years ago by
Gordon Smyth
52k • written 4.5 years ago by
lessismore
▴ 20
4
votes
5
replies
1.8k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 5.3 years ago by
Gordon Smyth
52k • written 5.3 years ago by
Pietro
▴ 40
1
vote
1
reply
1.7k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 6.1 years ago by
Michael Love
43k • written 6.4 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.7k
views
Foldchange values Limma
limma
RNAseq
foldchange
6.2 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: Heatmap of rnaseq data with z-score scale
by
giovanna
• 0
thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…
Answer: Heatmap of rnaseq data with z-score scale
by
James W. MacDonald
68k
Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…
Comment: Heatmap of rnaseq data with z-score scale
by
giovanna
• 0
![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a
Comment: parameters of filterByExpr
by
caroline.zanchi
▴ 10
Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…
Answer: Typo in the help of lmFit()
by
Gordon Smyth
52k
Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…
Votes
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
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