Bioconductor Foldchange

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460

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FoldChange DiffBind lfcShrink

updated 9 weeks ago by Rory Stark ★ 5.0k • written 11 weeks ago by bhandary.8590 • 0

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376

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FoldChange DiffBind lfcShrink Cut&TagData

3 months ago bhandary.8590 • 0

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1.3k

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DESeq2 TPM Foldchange

updated 18 months ago by Michael Love 40k • written 18 months ago by dadca596 • 0

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694

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edgeR RNA-Seq log2 foldchange q_value

updated 21 months ago by Gordon Smyth 48k • written 21 months ago by johndavidgriner74 • 0

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881

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sign FoldChange DESeq2 reference

updated 21 months ago by Michael Love 40k • written 21 months ago by yampolsk • 0

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3.5k

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DifferentialExpression DEA FC FoldChange edgeR

2.1 years ago zhxiaokang ▴ 20

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1.9k

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EdgeR RNAseq Foldchange

updated 2.2 years ago by swbarnes2 ★ 1.3k • written 2.3 years ago by najib • 0

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1.8k

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foldchange topGO DifferentialExpression enrichment

updated 2.9 years ago by Gordon Smyth 48k • written 2.9 years ago by lessismore ▴ 20

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1.1k

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limma microarray foldchange DEG GEO

updated 3.6 years ago by Gordon Smyth 48k • written 3.7 years ago by Pietro ▴ 40

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1.1k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 4.4 years ago by Michael Love 40k • written 4.7 years ago by fiona.dick91 ▴ 60

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1.2k

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limma RNAseq foldchange

4.6 years ago susana.amaral.teixeira ▴ 20

11 results • Page 1 of 1

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

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