Bioconductor Foldchange

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StatisticalMethod FoldChange edgeR RNASeq

17 months ago Sabiha ▴ 20

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FoldChange DiffBind lfcShrink

updated 22 months ago by Rory Stark ★ 5.2k • written 22 months ago by bhandary.8590 ▴ 20

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1.5k

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FoldChange DiffBind lfcShrink Cut&TagData

23 months ago bhandary.8590 ▴ 20

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2.2k

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DESeq2 TPM Foldchange

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by dadca596 • 0

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1.2k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.4 years ago by Gordon Smyth 52k • written 3.4 years ago by johndavidgriner74 • 0

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1.6k

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sign FoldChange DESeq2 reference

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by yampolsk • 0

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7.2k

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DifferentialExpression DEA FC FoldChange edgeR

3.7 years ago zhxiaokang ▴ 20

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3.1k

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EdgeR RNAseq Foldchange

updated 3.9 years ago by swbarnes2 ★ 1.4k • written 3.9 years ago by najib • 0

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foldchange topGO DifferentialExpression enrichment

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by lessismore ▴ 20

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1.8k

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limma microarray foldchange DEG GEO

updated 5.3 years ago by Gordon Smyth 52k • written 5.3 years ago by Pietro ▴ 40

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1.7k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.1 years ago by Michael Love 43k • written 6.4 years ago by fiona.dick91 ▴ 60

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limma RNAseq foldchange

6.2 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…

Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a

Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Awards • All

Scholar to James W. MacDonald 68k