Bioconductor DTU

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603

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DTU DEXSeq RNADTU

updated 16 months ago by Alejandro Reyes ★ 1.8k • written 21 months ago by Nirad • 0

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668

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DESeq2 DRIMSeq dtu RNASeq

23 months ago • updated 22 months ago sbcn ▴ 80

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986

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 24 months ago by k.vitting.seerup ▴ 120 • written 2.2 years ago by jbono ▴ 10

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675

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DRIMSeq R DTU technical replicates deseq2

updated 2.9 years ago by Kevin Blighe 3.8k • written 2.9 years ago by poecile.pal • 0

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1.2k

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RATs RNA-Seq Isoforms DTU expression

updated 3.9 years ago by fruce_ki ▴ 20 • written 3.9 years ago by UserAnonyme • 0

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996

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 4.1 years ago by Michael Love 40k • written 4.4 years ago by fiona.dick91 ▴ 10

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1.9k

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tximport dtu salmon TPM rnaseqDTU

updated 4.2 years ago by Michael Love 40k • written 4.2 years ago by fiona.dick91 ▴ 10

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1.5k

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rnaseqDTU dtu

updated 4.4 years ago by Michael Love 40k • written 4.4 years ago by rbenel ▴ 30

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814

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DTU DRIMSeq rnaseqDTU

updated 4.4 years ago by Michael Love 40k • written 4.4 years ago by fiona.dick91 ▴ 10

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1.3k

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drimseq stageR dtu salmon rna seq

updated 4.9 years ago by Koen Van den Berge ▴ 180 • written 4.9 years ago by fiona.dick91 ▴ 10

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1.1k

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drimseq DTU

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

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Replies

Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

Votes

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

Awards • All

Scholar to Tiago C. Silva ▴ 270