Bioconductor Rory stark

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diffbind rory stark chip seq

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.0 years ago by bioinfouser2 ▴ 10

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diffbind chipseq atac-seq rory stark

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by andrew.gehrke • 0

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CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 21 months ago by arisarkar88 ▴ 40 • written 4.0 years ago by bioinfouser2 ▴ 10

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diffbind rory stark

6.8 years ago andrew.gehrke • 0

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rory stark

7.4 years ago • updated 6.9 years ago mforoo1 • 0

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diffbind Rory Stark coordinate

updated 4.1 years ago by Rory Stark ★ 5.2k • written 4.2 years ago by Guandong Shang ▴ 40

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Rory Stark diffbind TMM edgeR chipseq

updated 7.8 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by akdess • 0

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Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Answer: Help with running egsea() by James W. MacDonald 65k

There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …

Comment: [Mfuzz] Error in cmeans(exprs(eset) by Caio • 0

You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …

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Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Answer: Help with running egsea()

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)

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