Bioconductor Rory stark

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diffbind rory stark chip seq

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.0 years ago by bioinfouser2 ▴ 10

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diffbind chipseq atac-seq rory stark

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by andrew.gehrke • 0

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CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 20 months ago by arisarkar88 ▴ 40 • written 4.0 years ago by bioinfouser2 ▴ 10

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diffbind rory stark

6.7 years ago andrew.gehrke • 0

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rory stark

7.3 years ago • updated 6.9 years ago mforoo1 • 0

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diffbind Rory Stark coordinate

updated 4.1 years ago by Rory Stark ★ 5.2k • written 4.2 years ago by Guandong Shang ▴ 40

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Rory Stark diffbind TMM edgeR chipseq

updated 7.8 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by akdess • 0

7 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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