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rrbs
•
reset
4
votes
5
replies
1.0k
views
edgeR for a mixture experiment
edgeR
model-selection
RRBS
mixture-experiment
3.1 years ago
ingerslev
• 0
0
votes
2
replies
846
views
MethylCC for RRBS data of Cord Blood
MethylCC
RRBS
cord blood
3.8 years ago
weichen-cls
• 0
0
votes
0
replies
752
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
3.8 years ago
i.s.castanho
• 0
0
votes
1
reply
611
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.1 years ago
i.s.castanho
• 0
5
votes
14
replies
2.1k
views
Odd P-value distribution in edgeR on RRBS data
edgeR
rrbs
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ingerslev
• 0
0
votes
4
replies
2.2k
views
MethylKit read in issue
methykit
rrbs
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
bekah
▴ 40
0
votes
3
replies
1.5k
views
scalability of edgeR on RRBS methylation data
edgeR
methyation
RRBS
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
osa.zuta
▴ 40
0
votes
1
reply
1.1k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.1 years ago
l.eijssen
• 0
1
vote
4
replies
1.8k
views
Using SVA with RRBS data
sva
RRBS
updated 7.2 years ago by
Jeff Leek
▴ 650 • written 7.2 years ago by
mrodrigues.fernanda
▴ 10
0
votes
3
replies
1.7k
views
SVA package for RRBS - bisulfite methylation data
rrbs
batch effect
methylation
sva
updated 7.6 years ago by
dashbrook1
• 0 • written 8.8 years ago by
GFM
▴ 20
4
votes
2
replies
1.4k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
nhejazi
• 0
0
votes
5
replies
2.0k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
9.0 years ago
maria.maqueda
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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Michael Love
41k
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to
Malcolm Cook
★ 1.6k
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Gordon Smyth
50k
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priyanka.m
• 0
Popular Question
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Vincent J. Carey, Jr.
6.7k
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