Showing : rtracklayer • reset
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rtracklayer connect problems
rtracklayer rtracklayer
11.9 years ago Michael Lawrence ★ 11k
0
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1
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1.4k
views
rtracklayer\'s browseGenome function failes when invoked according to vignette
rtracklayer rtracklayer
updated 11.9 years ago by ★ 11k • written 11.9 years ago by ★ 13k
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BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
12.2 years ago Hervé Pagès 16k
0
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0
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1.9k
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Gviz and Leishmania genomes
rtracklayer genomes Gviz rtracklayer genomes Gviz
12.2 years ago florian.hahne@novartis.com ★ 1.6k
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14
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4.1k
views
Genome Browser and R
rtracklayer rtracklayer
12.3 years ago khadeeja ismail ▴ 400
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0
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2.0k
views
working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
12.3 years ago Robert Castelo ★ 3.4k
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1
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2.0k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 12.3 years ago by ★ 11k • written 12.3 years ago by ▴ 40
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5
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2.2k
views
Finding my un-counted reads
Sequencing rtracklayer ShortRead GenomicRanges Sequencing rtracklayer ShortRead
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 300
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1
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3.0k
views
Problem with importing bigWig file from GEO with rtracklayer?
rtracklayer rtracklayer
updated 12.5 years ago by ★ 1.6k • written 12.5 years ago by ▴ 260
0
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4
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1.8k
views
IRanges::unlist in package
rtracklayer IRanges GenomicFeatures Rsamtools rtracklayer IRanges GenomicFeatures Rsamtools
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 220
0
votes
1
reply
826
views
Interpretation of output files
Annotation rtracklayer TSSi Annotation rtracklayer TSSi
updated 12.5 years ago by ★ 1.3k • written 12.5 years ago by ★ 13k
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0
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887
views
rtracklayer carrying over query results
rtracklayer rtracklayer
12.5 years ago Janet Young ▴ 740
0
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5
replies
1.7k
views
rtracklayer error?
Cancer rtracklayer Cancer rtracklayer
12.5 years ago Janet Young ▴ 740
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0
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1.2k
views
[devteam-bioc] sort error in GRange
rtracklayer GenomicRanges rtracklayer GenomicRanges
12.7 years ago Valerie Obenchain ★ 6.8k
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6
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2.7k
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Advice on reading big BED/BAM and ChIP-seq quality control
GO rtracklayer Rsamtools GO rtracklayer Rsamtools
updated 12.7 years ago by ▴ 350 • written 12.7 years ago by ▴ 240
0
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2
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1.7k
views
IdeogramTrack and bigWig file errors in Gviz
Network rtracklayer CAMERA Gviz Network rtracklayer CAMERA Gviz
12.8 years ago Michael Lawrence ★ 11k
0
votes
6
replies
2.5k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO rtracklayer CAMERA chipseq Gviz ChIPSeq GO rtracklayer CAMERA chipseq Gviz
updated 12.8 years ago by ▴ 750 • written 12.8 years ago by ★ 13k
0
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4
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10k
views
rtracklayer importing gtf files
rtracklayer DESeq GenomicRanges rtracklayer DESeq GenomicRanges
updated 12.8 years ago by ★ 11k • written 12.8 years ago by ★ 13k
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0
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811
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downloading a conservation track with rtracklayer on several chromosome seqs
rtracklayer rtracklayer
12.9 years ago Dario Strbenac ★ 1.6k
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1
reply
864
views
rtracklayer weirdness
BSgenome BSgenome rtracklayer BSgenome BSgenome rtracklayer
updated 13.0 years ago by ★ 11k • written 13.0 years ago by ★ 4.2k
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2
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1.5k
views
Rtracklayer and track/table names
rtracklayer rtracklayer
13.0 years ago Gustavo Fernández Bayón ▴ 440
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2
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1.3k
views
rtracklayer: small problem
BSgenome BSgenome rtracklayer BSgenome BSgenome rtracklayer
updated 13.0 years ago by ★ 11k • written 13.0 years ago by ▴ 440
0
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0
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1.5k
views
question regarding gviz
rtracklayer Gviz rtracklayer Gviz
13.1 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
1
reply
1.4k
views
rtracklayer export method requires unique names
rtracklayer rtracklayer
updated 13.1 years ago by ★ 11k • written 13.1 years ago by ▴ 60
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2
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1.1k
views
trackHubs in rtracklayer
GO rtracklayer GO rtracklayer
updated 13.2 years ago by ★ 11k • written 13.2 years ago by ★ 4.2k
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0
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2.0k
views
Gviz
rtracklayer Gviz rtracklayer Gviz
13.2 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
1
reply
1.4k
views
intersecting GRanges with UCSCTableQuery
rtracklayer rtracklayer
updated 13.4 years ago by ★ 11k • written 13.4 years ago by ▴ 150
0
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3
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1.5k
views
rtracklayer blocks function
rtracklayer rtracklayer
updated 13.5 years ago by ★ 11k • written 13.5 years ago by ▴ 740
0
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1
reply
1.1k
views
rtracklayer import.gff3 mangling scores
SNP rtracklayer SNP rtracklayer
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ▴ 270
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0
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946
views
Converting floating point RangedData to Rle
Coverage convert rtracklayer Coverage convert rtracklayer
13.6 years ago Marcin Imielinski ▴ 30
0
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4
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5.2k
views
Uploading BED file: rtracklayer
rtracklayer rtracklayer
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ▴ 50
0
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1
reply
945
views
how to load RangedData for all chromosomes in one tab in UCSC browser using browserView from rtracklayer
GO Cancer rtracklayer GO Cancer rtracklayer
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 370
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1
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1.0k
views
how to load RangedData for all chromosomes in one tab in UCSC browser using browserView from rtracklayer
rtracklayer rtracklayer
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 370
0
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1
reply
2.0k
views
Some particulars about rtracklayer::liftOver
Cancer rtracklayer Cancer rtracklayer
updated 13.8 years ago by ★ 11k • written 13.8 years ago by ★ 13k
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1
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1.8k
views
geneLenDataBase installation issues
GO rtracklayer goseq BiocInstaller GO rtracklayer goseq BiocInstaller
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 50
0
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1
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1.2k
views
RangedData Element Metadata
Coverage rtracklayer ASSIGN Coverage rtracklayer ASSIGN
updated 13.8 years ago by ★ 11k • written 13.8 years ago by ★ 1.6k
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0
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1.6k
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings Category BSgenome rtracklayer GO
13.9 years ago Matthew Young ▴ 50
0
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0
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2.2k
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Gviz question
Visualization rtracklayer Gviz Visualization rtracklayer Gviz
13.9 years ago florian.hahne@novartis.com ★ 1.6k
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0
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1.1k
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings BSgenome rtracklayer goseq GO
13.9 years ago Alicia Oshlack ▴ 100
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0
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1.0k
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making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer BSgenome Biostrings BSgenome rtracklayer GenomicFeatures goseq GO
13.9 years ago Hervé Pagès 16k
0
votes
1
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1.2k
views
Installation errors for DESeq, Genomic Ranges etc.
rtracklayer DESeq GenomicRanges BiocInstaller rtracklayer DESeq GenomicRanges BiocInstaller
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 220
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1
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1.4k
views
error "Too many pushAbortHandlers, can only handle 11" while exporting bedGraph/bigWig using rtracklayer from Bioconductor
rtracklayer rtracklayer
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ★ 1.6k
0
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1
reply
1.2k
views
rtracklayer error
SNP BSgenome BSgenome rtracklayer SNP BSgenome BSgenome rtracklayer
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ▴ 380
0
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6
replies
1.5k
views
rtracklayer laying a track
rtracklayer rtracklayer
updated 14.1 years ago by ★ 11k • written 14.1 years ago by ★ 13k
0
votes
3
replies
3.9k
views
Trying to use the liftOver function from the rtracklayer package in R 2.14.0
PROcess rtracklayer bumphunter PROcess rtracklayer bumphunter
updated 14.2 years ago by ★ 11k • written 14.2 years ago by ★ 1.1k
0
votes
3
replies
1.5k
views
Some more rtracklayer questions (re: WIG and .VSTEP files)
Coverage rtracklayer GenomicRanges Coverage rtracklayer GenomicRanges
updated 14.2 years ago by ★ 11k • written 14.2 years ago by ★ 4.2k
0
votes
7
replies
2.0k
views
export Views of Rle in rtracklayer
Coverage rtracklayer Coverage rtracklayer
updated 14.2 years ago by ★ 11k • written 14.2 years ago by ▴ 190
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votes
3
replies
2.3k
views
compilation error for rtracklayer
rtracklayer rtracklayer
updated 14.2 years ago by ★ 11k • written 14.2 years ago by ▴ 500
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1
reply
1.8k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 14.2 years ago by ★ 11k • written 14.2 years ago by ★ 1.0k
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3
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1.1k
views
rtracklayer import.bed pipe inconsistency
rtracklayer GenomicRanges rtracklayer GenomicRanges
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ▴ 20
262 results • Page 4 of 6
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Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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