Showing : rtracklayer • reset
0
votes
8
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3.9k
views
views on Rle using GRanges object
RNASeq Coverage GO rtracklayer RNASeq Coverage GO rtracklayer
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 740
0
votes
1
reply
908
views
Very high memory usage when using rtracklayer to import GFF3
convert rtracklayer convert rtracklayer
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ▴ 140
0
votes
1
reply
1.4k
views
rtracklayer error?
rtracklayer rtracklayer
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ★ 1.1k
0
votes
1
reply
1.4k
views
rtracklayer - browserSession error
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 14.5 years ago by ★ 11k • written 14.5 years ago by ★ 1.1k
0
votes
1
reply
2.0k
views
rtracklayer gff import
rtracklayer rtracklayer
updated 14.5 years ago by ★ 11k • written 14.5 years ago by ▴ 110
0
votes
3
replies
4.0k
views
UCSC: convert from hg18 to hg19 - rtracklayer?
rtracklayer rtracklayer
updated 14.5 years ago by ★ 11k • written 14.5 years ago by ★ 1.1k
0
votes
3
replies
8.5k
views
rtracklayer gff import
rtracklayer rtracklayer
updated 14.6 years ago by ★ 11k • written 14.6 years ago by ▴ 110
0
votes
7
replies
2.1k
views
read gz compressed wig files?
Cancer rtracklayer Cancer rtracklayer
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ▴ 50
0
votes
5
replies
1.7k
views
rtracklayer export fails
rtracklayer rtracklayer
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 550
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO Cancer BSgenome graph Biostrings GOstats BSgenome rtracklayer GO Cancer BSgenome
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ▴ 200
0
votes
1
reply
1.0k
views
Localizing repetitive regions on a chromosome
BSgenome biomaRt BSgenome rtracklayer BSgenome biomaRt BSgenome rtracklayer
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ▴ 500
0
votes
2
replies
948
views
rtracklayer 'track' method, a viewLimits parameter?
rtracklayer IRanges rtracklayer IRanges
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ★ 1.1k
0
votes
4
replies
1.7k
views
rtracklayer 'track' method, a viewLimits parameter?
rtracklayer rtracklayer
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ★ 1.1k
0
votes
1
reply
1.3k
views
Using rtracklayer for ranges of Genomic DNA
rtracklayer rtracklayer
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ▴ 30
0
votes
4
replies
1.3k
views
GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
BSgenome BSgenome rtracklayer BSgenome BSgenome rtracklayer
updated 15.1 years ago by 6.7k • written 15.1 years ago by ★ 1.1k
0
votes
3
replies
1.5k
views
strange ChIPpeakAnno and rtracklayer interaction.
GO annotate rtracklayer ChIPpeakAnno GO annotate rtracklayer ChIPpeakAnno
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ▴ 20
0
votes
3
replies
1.5k
views
svn version of rtracklayer error
rtracklayer rtracklayer
15.1 years ago Michael Dondrup ▴ 550
0
votes
1
reply
781
views
rtracklayer interface to GBrowse
rtracklayer rtracklayer
updated 15.2 years ago by ★ 11k • written 15.2 years ago by ▴ 340
0
votes
2
replies
1.0k
views
rtracklayer issues with other packages?
GO BSgenome BSgenome rtracklayer GO BSgenome BSgenome rtracklayer
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 200
0
votes
0
replies
2.0k
views
GenomicFeatures makeTranscriptDbFromUCSC on refGene supported?
Visualization rtracklayer GenomicFeatures Visualization rtracklayer GenomicFeatures
15.3 years ago Erik van den Akker ▴ 50
0
votes
6
replies
2.1k
views
GenomicFeatures: makeTranscriptDbFromUCSC on "refGene" supported?
rtracklayer GenomicFeatures rtracklayer GenomicFeatures
updated 15.3 years ago by 6.7k • written 15.3 years ago by ▴ 50
0
votes
1
reply
1.6k
views
question on makeTranscriptDbFromUCSC
Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA
updated 15.4 years ago by ▴ 10 • written 15.4 years ago by 16k
0
votes
1
reply
1.5k
views
loop over IRanges spaces
Coverage convert rtracklayer ASSIGN Coverage convert rtracklayer ASSIGN
updated 15.5 years ago by ★ 11k • written 15.5 years ago by ▴ 60
0
votes
2
replies
1.6k
views
pulling functional information for SNPs
SNP affy biomaRt rtracklayer SNP affy biomaRt rtracklayer
updated 15.5 years ago by ★ 7.4k • written 15.5 years ago by 68k
0
votes
0
replies
713
views
rtracklayer - getTable
Cancer rtracklayer Cancer rtracklayer
15.5 years ago Michael Lawrence ★ 11k
0
votes
1
reply
1.2k
views
rtracklayer 1.6: invalid class "ucscCart" object
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 15.6 years ago by ★ 11k • written 15.6 years ago by ★ 1.1k
0
votes
6
replies
2.0k
views
load failed for 'Rlibstree'
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 15.6 years ago by ★ 7.4k • written 15.6 years ago by ★ 1.1k
0
votes
1
reply
936
views
rtrackalyer too slow?
rtracklayer rtracklayer
updated 15.7 years ago by ★ 11k • written 15.7 years ago by ▴ 350
0
votes
12
replies
3.7k
views
how to use rtracklayer to retrieve sequence of list of coordinates
rtracklayer rtracklayer
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 220
0
votes
1
reply
1.3k
views
handling missing data with ucscTableQuery in rtracklayer package
rtracklayer rtracklayer
updated 15.8 years ago by ★ 11k • written 15.8 years ago by ▴ 30
0
votes
1
reply
1.1k
views
rtracklayer and multiple ranges
rtracklayer rtracklayer
updated 15.8 years ago by ★ 11k • written 15.8 years ago by ▴ 170
0
votes
0
replies
1.4k
views
stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
15.8 years ago Robert Castelo ★ 3.4k
0
votes
4
replies
2.0k
views
Get genomic sequences
biomaRt rtracklayer biomaRt rtracklayer
updated 15.8 years ago by ▴ 970 • written 15.8 years ago by ▴ 50
0
votes
4
replies
1.8k
views
phastCon-scores
rtracklayer spliceSites rtracklayer spliceSites
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 50
0
votes
1
reply
1.4k
views
Please Help with rMAT: NAs in Enrich Object
Normalization Preprocessing rtracklayer IRanges rMAT Normalization Preprocessing IRanges
updated 15.9 years ago by 25k • written 15.9 years ago by ▴ 410
0
votes
1
reply
1.0k
views
import.gff3 bug in rtracklayer v1.6
rtracklayer rtracklayer
updated 16.0 years ago by ▴ 620 • written 16.0 years ago by ▴ 100
0
votes
1
reply
1.1k
views
Conservation tracks in BioC?
Annotation rtracklayer Annotation rtracklayer
updated 16.0 years ago by ▴ 620 • written 16.0 years ago by ▴ 30
0
votes
1
reply
2.3k
views
rtracklayer bed import
Annotation rtracklayer Annotation rtracklayer
updated 16.0 years ago by ▴ 620 • written 16.0 years ago by ▴ 170
0
votes
4
replies
1.9k
views
rtracklayer issue (getTable)
rtracklayer rtracklayer
updated 16.1 years ago by ▴ 620 • written 16.1 years ago by ★ 1.1k
0
votes
1
reply
956
views
(no subject)
rtracklayer IRanges rtracklayer IRanges
updated 16.2 years ago by ★ 1.6k • written 16.2 years ago by ▴ 450
0
votes
1
reply
1.2k
views
rtracklayer browserView
CGH rtracklayer CGH rtracklayer
16.2 years ago Giulio Di Giovanni ▴ 540
0
votes
0
replies
5.8k
views
Reading GFF files into R and GenomeGraphs
Coverage Annotation Visualization convert GLAD GenomeGraphs rtracklayer IRanges Coverage
16.3 years ago Michael Dondrup ▴ 140
0
votes
5
replies
2.2k
views
BED15 format for rtracklayer
Microarray Visualization rtracklayer Microarray Visualization rtracklayer
updated 16.3 years ago by ▴ 620 • written 16.3 years ago by ▴ 500
0
votes
1
reply
1.1k
views
no 'strands' method on GenomicData in 2.5?
hgu133plus2 rtracklayer IRanges hgu133plus2 rtracklayer IRanges
updated 16.3 years ago by ▴ 620 • written 16.3 years ago by ★ 1.1k
0
votes
3
replies
1.5k
views
problem about using 'rtracklayer' package to retrieve SNP chromosome position
rtracklayer rtracklayer
updated 16.3 years ago by ▴ 620 • written 16.3 years ago by ▴ 450
0
votes
0
replies
1.1k
views
problem about using 'rtracklayer' to retrieve chromosome position of SNPs
rtracklayer rtracklayer
16.3 years ago li lilingdu ▴ 450
0
votes
1
reply
1.4k
views
rtracklayer and gene symbols
rtracklayer rtracklayer
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 170
0
votes
1
reply
1.1k
views
rtracklayer <-> UCSC interaction currently broken
PROcess rtracklayer PROcess rtracklayer
16.4 years ago Michael Lawrence ▴ 620
0
votes
2
replies
1.3k
views
rtracklayer no longer uses TrackSet?
rtracklayer rtracklayer
updated 16.4 years ago by ▴ 620 • written 16.4 years ago by ★ 1.1k
0
votes
2
replies
1.6k
views
interoperability between IRanges/ShortRead and rtracklayer
Coverage rtracklayer IRanges Coverage rtracklayer IRanges
updated 16.5 years ago by ★ 1.6k • written 16.5 years ago by ▴ 150
262 results • Page 5 of 6
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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