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Missing chromosomal locations in hgu133a package
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updated 17.9 years ago by ▴ 870 • written 17.9 years ago by ▴ 60
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2
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Bioconductor data sets - Unigene IDs
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updated 21.7 years ago by ★ 2.3k • written 21.7 years ago by ★ 13k
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4
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
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13.2 years ago M. Emily Merrill ▴ 20
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trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.3 years ago by ▴ 10 • written 19.3 years ago by ▴ 320
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GeneSpring can call R functions?
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updated 19.0 years ago by ★ 1.1k • written 19.0 years ago by ▴ 250
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6
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1.1k
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Limma: background correction. Use or ignore?
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updated 18.1 years ago by ★ 2.4k • written 18.1 years ago by ★ 1.9k
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2
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
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updated 15.1 years ago by 16k • written 15.1 years ago by ▴ 20
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7
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 50
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Aha: different error may be a clue: RE: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
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updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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GWASTools suggestions: explicit interface for GenotypeReaders,
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updated 10.4 years ago by ▴ 870 • written 10.4 years ago by ▴ 70
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6
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1.7k
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separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
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updated 17.5 years ago by ▴ 900 • written 17.5 years ago by 25k
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3
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Package xps - Problem accessing README file
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updated 13.5 years ago by ★ 3.9k • written 13.5 years ago by ★ 8.2k
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Combining data from different versions of Illumina HumanHT-12 v3
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updated 13.1 years ago by ★ 3.6k • written 13.1 years ago by ▴ 220
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2
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1.7k
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BH vs BY in p.adjust
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updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 50
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4
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1.5k
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About beadarray normaliseIllumina() warning messages
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updated 16.4 years ago by ▴ 410 • written 16.4 years ago by ▴ 150
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5
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1.6k
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe limma safe ArrayExpress Normalization probe limma safe ArrayExpress
updated 13.1 years ago by ★ 3.6k • written 13.1 years ago by ▴ 220
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Can't reproduce assessment data included in affycomp package
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updated 12.9 years ago by ▴ 590 • written 12.9 years ago by ★ 2.3k
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2.0k
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Important information (Discover The Ways That We Protect Your Online Access)
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15.9 years ago �2008 HALIFAX SECURITY ▴ 20
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3
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1.5k
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Strand information for dbSNP packages
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updated 12.2 years ago by ★ 6.8k • written 12.2 years ago by ▴ 650
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votes
5
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1.4k
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frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 11.6 years ago by ▴ 830 • written 11.6 years ago by ▴ 260
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votes
1
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1.4k
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe SCAN.UPC hgu133a2 safe SCAN.UPC
updated 11.5 years ago by ▴ 590 • written 11.5 years ago by ▴ 850
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2
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1.5k
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frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 260
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4
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1.4k
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DEXSeq on two-exon genes: how to specify a formula without redundant terms
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11.0 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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1
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1.1k
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limma 3-way interaction
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18.0 years ago Jacob Michaelson ▴ 320
0
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0
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1.1k
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CRISPRseek: searchHits() optimization
Preprocessing BSgenome safe BSgenome CRISPRseek Preprocessing BSgenome safe BSgenome
9.8 years ago Julie Zhu ★ 4.3k
0
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0
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1.3k
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
safe BiocInstaller safe BiocInstaller
12.5 years ago Firas Swidan ▴ 50
0
votes
0
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664
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!SPAM: Sale Offer:- ViagraCializ Pills at LowestPrices on net! $1.31/tab, find out more ewlelk 6qu
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15.5 years ago Anisa Gracie ▴ 10
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0
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
15.1 years ago Ben Madin ▴ 20
0
votes
0
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788
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biomaRt - current devel version of biomaRt+RCurl don't work
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15.0 years ago Patrick Aboyoun ★ 1.6k
0
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0
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667
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You Don't Have to Quit Smoking. New Technology!
Cancer safe Cancer safe
14.7 years ago inLife E-Cigarettes ▴ 10
0
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0
replies
678
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Now you can smoke anywhere you want!
Cancer safe Cancer safe
14.7 years ago inLife E-Cigarettes ▴ 10
0
votes
0
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1.1k
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flowCore 1.22.0 broken for some FCS files
Cancer safe flowCore Cancer safe flowCore
11.9 years ago Josef Spidlen ▴ 140
0
votes
0
replies
887
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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
13.1 years ago Philippe Serhal ▴ 10
0
votes
0
replies
1.0k
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Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
13.1 years ago Harris A. Jaffee ▴ 590
0
votes
0
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955
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Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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12.5 years ago Andrea Grilli ▴ 240
0
votes
0
replies
1.2k
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dbSNP strand information
SNPlocs safe SNPlocs safe
12.2 years ago Alex Gutteridge ▴ 650
0
votes
0
replies
898
views
SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe hgu133a2 safe
11.5 years ago Guest User ★ 13k
0
votes
0
replies
1.0k
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BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
11.3 years ago Dave Gerrard ▴ 40
0
votes
0
replies
928
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Log transformation and left censoring
limma safe edgeR limma safe edgeR
11.3 years ago Paul Harrison ▴ 100
0
votes
0
replies
1.1k
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BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
11.3 years ago Peter Glaus ▴ 70
0
votes
0
replies
934
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SAM for protemics - low q values
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10.7 years ago Hendrik Nolte ▴ 10
42 results • Page 1 of 1
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Comment: Volcano plot of scRNA-seq data not "centered" by Michael Love 42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by jovel_juan ▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
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