Bioconductor Sam

Showing : sam • reset

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7.5k

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bam sam alignment biostrings

11.1 years ago ben.ward ▴ 30

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3.1k

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featurecounts SAM htseqcounts

updated 2.7 years ago by Yang Liao ▴ 450 • written 8.8 years ago by courtney.stairs • 0

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1.8k

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samr SAM siggenes bioconductor differential gene expression

11.1 years ago svlachavas ▴ 840

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3.2k

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Limma SAM differential expression

updated 11.3 years ago by James W. MacDonald 68k • written 11.3 years ago by Bade ▴ 310

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1.9k

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r SAM bioconductor

updated 11.1 years ago by Simon Anders ★ 3.8k • written 11.1 years ago by svlachavas ▴ 840

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814

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microarray SAM

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by xgt1986627 • 0

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2.0k

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SAM siggenes microarray gene expression sam

9.1 years ago Brian Smith ▴ 120

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1.8k

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differential gene expression sam

updated 9.9 years ago by Aaron Lun ★ 29k • written 9.9 years ago by cirisarri95 • 0

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1.8k

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SAM samtools pairwisealignment alignment blastn

7.6 years ago ktehmsen • 0

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2.0k

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DEXSeq splicing python SAM

10.4 years ago Fiona ▴ 70

10 results • Page 1 of 1

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Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within by Pat • 0

Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…

Comment: Question on processing compound protein groups in limpa by brianpeterson1210 • 0

Thank you[,][1] Appreciated! [1]: http://paint3d.org

Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Votes

Comment: Question about using LRT test for time course experiments with DESeq2

A: DESeq2 LRT test for multi-factor designs

Answer: RNA Seq using Lrt

Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

Awards • All

Teacher to ATpoint ★ 5.0k

Teacher to Michael Love 43k