Bioconductor Sam

Showing : sam • reset

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441

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microarray SAM

updated 4.5 years ago by James W. MacDonald 64k • written 4.5 years ago by xgt1986627 ▴ 10

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938

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SAM samtools pairwisealignment alignment blastn

5.3 years ago ktehmsen • 0

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2.0k

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featurecounts SAM htseqcounts

updated 5 months ago by Yang Liao ▴ 380 • written 6.6 years ago by courtney.stairs • 0

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1.3k

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SAM siggenes microarray gene expression sam

6.9 years ago Brian Smith ▴ 120

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1.2k

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differential gene expression sam

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by cirisarri95 • 0

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1.4k

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DEXSeq splicing python SAM

8.2 years ago Fiona ▴ 70

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5.7k

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bam sam alignment biostrings

8.8 years ago ben.ward ▴ 30

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1.2k

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samr SAM siggenes bioconductor differential gene expression

8.8 years ago svlachavas ▴ 820

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1.3k

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r SAM bioconductor

updated 8.9 years ago by Simon Anders ★ 3.7k • written 8.9 years ago by svlachavas ▴ 820

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2.3k

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Limma SAM differential expression

updated 9.0 years ago by James W. MacDonald 64k • written 9.0 years ago by Bade ▴ 310

10 results • Page 1 of 1

Recent ...

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Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0

Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …

Comment: enrichGOgradient color change by James W. MacDonald 64k

You could look at my answer and extrapolate from there.

Comment: enrichGOgradient color change by WU • 0

I would like to ask how to make the counts legend black. Thank you.

Answer: Problems with FLOWAI by Alexander • 0

Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…

Answer: Asses fit of variance prior by Gordon Smyth 49k

> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…

Votes

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

How to know if I should use voomWithQualityWeights() or not?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 720

Scholar to Gordon Smyth 49k

Popular Question to Frederik Ziebell ▴ 20