Bioconductor Sam

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640

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microarray SAM

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by xgt1986627 ▴ 10

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1.5k

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SAM samtools pairwisealignment alignment blastn

6.8 years ago ktehmsen • 0

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2.8k

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featurecounts SAM htseqcounts

updated 22 months ago by Yang Liao ▴ 450 • written 8.0 years ago by courtney.stairs • 0

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1.7k

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SAM siggenes microarray gene expression sam

8.3 years ago Brian Smith ▴ 120

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1.6k

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differential gene expression sam

updated 9.0 years ago by Aaron Lun ★ 28k • written 9.0 years ago by cirisarri95 • 0

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1.7k

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DEXSeq splicing python SAM

9.6 years ago Fiona ▴ 70

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6.9k

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bam sam alignment biostrings

10.3 years ago ben.ward ▴ 30

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1.6k

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samr SAM siggenes bioconductor differential gene expression

10.3 years ago svlachavas ▴ 840

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1.7k

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r SAM bioconductor

updated 10.3 years ago by Simon Anders ★ 3.8k • written 10.3 years ago by svlachavas ▴ 840

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2.9k

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Limma SAM differential expression

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by Bade ▴ 310

10 results • Page 1 of 1

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Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Charles • 0

I am trying this but it is slow. Actually it may be better to just make a VCF file with the appropriate tools and only then load it? ``` …

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Votes

Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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