Showing : santa • reset
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Selected probes from a given probeset
Microarray SANTA Microarray SANTA
12.0 years ago Ramiro Rodríguez ▴ 30
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Expressionset from ArrayExpress processed data
ArrayExpress SANTA ArrayExpress SANTA
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 20
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PLIER is available as open source
plier SANTA plier SANTA
updated 19.6 years ago by ▴ 50 • written 19.6 years ago by ▴ 50
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
updated 4.9 years ago by 50k • written 14.6 years ago by ▴ 450
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Affymetrix file parsers released under LGPL open source license
SANTA SANTA
updated 19.4 years ago by ▴ 60 • written 19.4 years ago by ▴ 50
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question on makeTranscriptDbFromUCSC
Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA
updated 13.9 years ago by ▴ 10 • written 13.9 years ago by 16k
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help needed on avereps function
Normalization probe limma SANTA Normalization probe limma SANTA
updated 14.9 years ago by ▴ 250 • written 14.9 years ago by ★ 1.3k
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
14.6 years ago Naomi Altman ★ 6.0k
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limma technical replicates and biological replicates in same design
limma SANTA
14.6 years ago • updated 4.9 years ago Gordon Smyth 50k
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
12.7 years ago stefano iacus ▴ 430
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limma Time Course Experiments question
graph limma SANTA graph limma SANTA
15.1 years ago Marcelo Laia ▴ 450
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FOSBE 2012
SANTA SANTA
12.0 years ago mabawsa ▴ 20
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Affymetrix Postdoctoral Opportunity
Microarray SANTA Microarray SANTA
20.4 years ago VanLieu, Connie ▴ 10
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Job: Statistical Analyst - Affymetrix, Inc.
Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA
19.1 years ago Higgs, Debi ▴ 10
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
12.5 years ago Claude Chelala ▴ 40
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[limma] Possible bug on read.maimages function ?
Annotation limma SANTA Annotation limma SANTA
14.6 years ago Marcelo Laia ▴ 450
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Bioconductor Digest, Vol 79, Issue 20
Annotation limma SANTA Annotation limma SANTA
14.6 years ago Gordon Smyth 50k
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OFF TOPIC high-density SSU rRNA microarray
Microarray SANTA Microarray SANTA
14.6 years ago Marcelo Laia ▴ 450
18 results • Page 1 of 1
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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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