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scRNASeq
•
reset
1
vote
11
replies
3.5k
views
Error: Bioconductor version cannot be validated; no internet connection?
scRNAseq
updated 6 months ago by
Manuel
• 0 • written 10 months ago by
Elham
• 0
1
vote
5
replies
856
views
Recommendation for large.n in filterByExpr
scRNAseq
edgeR
SingleCellExperiment
9 months ago • updated 8 months ago
duez.tolga
• 0
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
11 months ago • updated 10 months ago
Lluís Revilla Sancho
▴ 730
4
votes
3
replies
1.0k
views
Custom design for scRNA DGE with pseudobulking
scRNAseq
scrna
paireddesign
edgeR
pseudobulking
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
garcia
• 0
0
votes
2
replies
685
views
Could not find function "Standard Chromosomes"
scrna
scRNAseq
updated 6 months ago by
Gabriella
• 0 • written 14 months ago by
sarah.jobbins
• 0
0
votes
2
replies
214
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
6 weeks ago
rocanja
▴ 60
0
votes
2
replies
513
views
scRNA analysis : DEG between low and high-expressing cells
scRNAseq
7 months ago
Momo
• 0
0
votes
2
replies
919
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 18 days ago by
wichaidi
• 0 • written 17 months ago by
irvin.ng
• 0
1
vote
2
replies
812
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
5 months ago
ruba-mahmoud
• 0
0
votes
1
reply
1.0k
views
DESeq2 error after installing BiocManager
scRNAseq
RStudio
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
DrFizz
• 0
0
votes
1
reply
569
views
library(topGO) query
topGO
scRNAseq
updated 9 months ago by
Basti
▴ 780 • written 9 months ago by
Francesco
• 0
0
votes
1
reply
253
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 10 weeks ago by
ATpoint
★ 4.1k • written 10 weeks ago by
sodiogoes
• 0
0
votes
1
reply
389
views
FALSE error when checking a pre made sample data
Rstudio
scRNAseq
DESeq2
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
DrFizz
• 0
0
votes
1
reply
420
views
If highly-expressed genes are upregulated, what happens to genes with lower expression after normalization?
scRNA
scRNAseq
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
Omer
• 0
0
votes
1
reply
139
views
Can you find the correct transcript in scRNA seq data
scRNAseq
RNAseq
updated 26 days ago by
ATpoint
★ 4.1k • written 28 days ago by
Merav
• 0
0
votes
0
replies
352
views
adding noise to scRNA Seq counts
scRNAseq
9 months ago
Jiyuan
• 0
0
votes
0
replies
485
views
News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
11 months ago
info
▴ 10
17 results • Page
1 of 1
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Replies
Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Answer: Trim/Filter out-of-bounds GRanges
by
Michael Love
41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways"
by
Michael Love
41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
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