Bioconductor Sce

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4.1k

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sce SingleCellExperiment merge

updated 14 months ago by mollyab12 • 0 • written 2.0 years ago by achoppe ▴ 10

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1.8k

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SingleCellExperiment cluster identities sce

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by reinepapillon • 0

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1.2k

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singlecellexperiment sce scater

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by bharris • 0

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2.3k

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SingleCellExperiment scater sce quality control

updated 3.2 years ago by 1498554536 • 0 • written 4.1 years ago by Linda • 0

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1.4k

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sce markers single cell DE clusters

4.6 years ago ludmi.b • 0

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4.5k

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sce singlecellexperiment scRNAseq subsetting

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by TJ • 0

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873

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scater sce biotype R

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by thebadpenny • 0

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1.0k

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sce biomart annotation

updated 6.8 years ago by Mike Smith ★ 6.5k • written 6.8 years ago by linda.c.dansereau • 0

8 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

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Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length