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scrnaseq
•
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1
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11
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3.6k
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Error: Bioconductor version cannot be validated; no internet connection?
scRNAseq
updated 6 months ago by
Manuel
• 0 • written 10 months ago by
Elham
• 0
1
vote
5
replies
865
views
Recommendation for large.n in filterByExpr
scRNAseq
edgeR
SingleCellExperiment
9 months ago • updated 8 months ago
duez.tolga
• 0
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
11 months ago
Lluís Revilla Sancho
▴ 730
4
votes
3
replies
1.0k
views
Custom design for scRNA DGE with pseudobulking
scRNAseq
scrna
paireddesign
edgeR
pseudobulking
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
garcia
• 0
0
votes
2
replies
686
views
Could not find function "Standard Chromosomes"
scrna
scRNAseq
updated 6 months ago by
Gabriella
• 0 • written 14 months ago by
sarah.jobbins
• 0
0
votes
2
replies
222
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
7 weeks ago
rocanja
▴ 60
0
votes
2
replies
518
views
scRNA analysis : DEG between low and high-expressing cells
scRNAseq
7 months ago
Momo
• 0
0
votes
2
replies
930
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 23 days ago by
wichaidi
• 0 • written 18 months ago by
irvin.ng
• 0
1
vote
2
replies
838
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
5 months ago
ruba-mahmoud
• 0
0
votes
1
reply
1.0k
views
DESeq2 error after installing BiocManager
scRNAseq
RStudio
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
DrFizz
• 0
0
votes
1
reply
574
views
library(topGO) query
topGO
scRNAseq
updated 9 months ago by
Basti
▴ 780 • written 9 months ago by
Francesco
• 0
0
votes
1
reply
256
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 10 weeks ago by
ATpoint
★ 4.1k • written 11 weeks ago by
sodiogoes
• 0
0
votes
1
reply
390
views
FALSE error when checking a pre made sample data
Rstudio
scRNAseq
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
DrFizz
• 0
0
votes
1
reply
420
views
If highly-expressed genes are upregulated, what happens to genes with lower expression after normalization?
scRNA
scRNAseq
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
Omer
• 0
0
votes
1
reply
145
views
Can you find the correct transcript in scRNA seq data
scRNAseq
RNAseq
updated 4 weeks ago by
ATpoint
★ 4.1k • written 4 weeks ago by
Merav
• 0
0
votes
0
replies
357
views
adding noise to scRNA Seq counts
scRNAseq
9 months ago
Jiyuan
• 0
0
votes
0
replies
493
views
News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
11 months ago
info
▴ 10
17 results • Page
1 of 1
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Replies
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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