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segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
20 months ago
raven1306
• 0
0
votes
1
reply
799
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 4.4 years ago by
markus.riester
▴ 130 • written 4.4 years ago by
sruddy17
• 0
0
votes
0
replies
815
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
5.2 years ago
jlarsen728
• 0
1
vote
5
replies
1.2k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
5.7 years ago
Jenny.chien
• 0
0
votes
3
replies
1.5k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 6.8 years ago by
markus.riester
▴ 130 • written 6.8 years ago by
Luisa672
• 0
1
vote
2
replies
1.3k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 7.2 years ago by
Venkat Seshan
▴ 30 • written 7.2 years ago by
W. C.
▴ 10
0
votes
2
replies
1.1k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
kazi
• 0
7 results • Page
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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