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segmentation
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CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
5.7 years ago
Jenny.chien
• 0
1
vote
2
replies
1.3k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 7.2 years ago by
Venkat Seshan
▴ 30 • written 7.2 years ago by
W. C.
▴ 10
0
votes
3
replies
1.5k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 6.8 years ago by
markus.riester
▴ 130 • written 6.8 years ago by
Luisa672
• 0
0
votes
2
replies
1.1k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
kazi
• 0
0
votes
0
replies
813
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
5.2 years ago
jlarsen728
• 0
0
votes
1
reply
797
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 4.4 years ago by
markus.riester
▴ 130 • written 4.4 years ago by
sruddy17
• 0
0
votes
0
replies
499
views
Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
20 months ago
raven1306
• 0
7 results • Page
1 of 1
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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Rory Stark
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