Showing : siggenes • reset
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siggenes package
siggenes siggenes
updated 20.1 years ago by ▴ 900 • written 20.1 years ago by ▴ 140
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passing my data to siggenes package
multtest siggenes multtest siggenes
updated 20.1 years ago by ▴ 900 • written 20.1 years ago by ▴ 140
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siggenes error with rma & wilcoxon test
siggenes siggenes
updated 20.1 years ago by ▴ 900 • written 20.1 years ago by ▴ 250
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947
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Siggenes: How to deal with one treatment - five controls problem?
Microarray siggenes Microarray siggenes
updated 20.3 years ago by ▴ 190 • written 20.3 years ago by ▴ 10
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1.2k
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SAM slots ?
siggenes siggenes
20.4 years ago Giulio Di Giovanni ▴ 540
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1.4k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 20.4 years ago by ★ 1.4k • written 20.4 years ago by ★ 1.1k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
20.4 years ago Dick Beyer ★ 1.4k
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1.4k
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siggenes SAM FDR, # false discrepancies
siggenes siggenes
20.5 years ago Jacob Michaelson ▴ 320
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1.3k
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annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
20.5 years ago Yanqin Yang ▴ 250
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1.0k
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annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
20.5 years ago Seth Falcon ★ 7.4k
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850
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Gene selection: association with linear response and correction for multi test
Regression limma siggenes Regression limma siggenes
20.7 years ago david neil hayes ▴ 70
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Could you help me
siggenes siggenes
updated 20.8 years ago by ▴ 900 • written 20.8 years ago by ▴ 10
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problem with siggenes
Pharmacogenomics siggenes Pharmacogenomics siggenes
updated 20.9 years ago by ▴ 900 • written 20.9 years ago by ▴ 130
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Error message from running SAM for one-class case(siggenes)
siggenes siggenes
20.9 years ago Fangxin Hong ▴ 810
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Siggenes output only gives NAs?
siggenes siggenes
20.9 years ago Tiago R Magalhaes ▴ 60
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1.1k
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Questions of Significance Analysis of Microarrays(SAM){siggenes}
siggenes siggenes
21.0 years ago Holger Schwender ▴ 900
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1.2k
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Questions of Significance Analysis of Microarrays(SAM){siggenes}
siggenes siggenes
21.0 years ago yzu ▴ 10
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1.7k
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gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 21.1 years ago by ★ 7.4k • written 21.1 years ago by ▴ 130
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899
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calling SAM using siggenes package
siggenes siggenes
21.1 years ago saran.2.vardhanabhuti@gsk.com ▴ 10
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1.3k
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about siggenes
siggenes siggenes
updated 21.2 years ago by ▴ 900 • written 21.2 years ago by ▴ 20
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4
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1.5k
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using mat.samp in siggenes
siggenes siggenes
updated 21.2 years ago by ▴ 900 • written 21.2 years ago by ▴ 20
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SAM: the fudge factor in Siggenes and Excel
siggenes ASSIGN siggenes ASSIGN
21.2 years ago Caimiao Wei ▴ 100
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969
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downstream analysis of differentially expressed genes
Microarray Cancer multtest affy limma siggenes factDesign Microarray Cancer multtest
21.6 years ago James W. MacDonald 68k
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3
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1.5k
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Confusion for choosing package for microarray data analysis
Microarray limma siggenes marray Microarray limma siggenes marray
updated 21.7 years ago by ▴ 140 • written 21.7 years ago by ▴ 60
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1.7k
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warning messages in gcrma
Microarray Normalization Cancer moe430a moe430b cdf probe affy gcrma siggenes GeneSpring
updated 21.7 years ago by 68k • written 21.7 years ago by ▴ 210
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3
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1.3k
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SAM : warning messages problem
siggenes siggenes
updated 21.7 years ago by 68k • written 21.7 years ago by ▴ 90
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2.3k
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
21.8 years ago Matthew Hannah ▴ 940
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1.2k
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SAM output in siggenes package
siggenes siggenes
updated 22.0 years ago by 68k • written 22.0 years ago by ▴ 90
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1.3k
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SAM in siggenes package
Microarray Cancer siggenes Microarray Cancer siggenes
updated 22.0 years ago by ▴ 900 • written 22.0 years ago by 68k
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Bioconductor
Microarray Normalization Cancer multtest siggenes convert Microarray Normalization Cancer
22.1 years ago James W. MacDonald 68k
80 results • Page 2 of 2
Recent ...
Replies
Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
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