Bioconductor SigneR

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signeR mutationcountmatrix expandedvcf

4.1 years ago Nikita • 0

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876

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signeR getseq

updated 5.6 years ago by renan.valieris ▴ 10 • written 5.6 years ago by TRASA • 0

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1.1k

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software error signeR

5.9 years ago Dan • 0

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signer install error

updated 6.0 years ago by shepherl 4.1k • written 6.0 years ago by taha.valizadeh • 0

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signeR

updated 7.9 years ago by renan.valieris ▴ 10 • written 7.9 years ago by Bogdan ▴ 670

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3.2k

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signeR

updated 8.0 years ago by renan.valieris ▴ 10 • written 8.0 years ago by Miguel Juliá • 0

6 results • Page 1 of 1

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Comment: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Thanks Hervé! Very helpful. However, I believe that `keepStandardChromosomes` gets called by `gDNAx`, and it appears not to work correctly.…

Answer: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k

Is this for genome assembly TGA4? https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006565.2/ If that's the case then: ``` library(t…

Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Votes

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k