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significance
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reset
1
vote
8
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3.8k
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DESeq2: betaPrior changes significance dramatically
deseq2
betaPrior
shrinkage
significance
6.0 years ago
brynedal
▴ 40
1
vote
1
reply
1.5k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
skids121
• 0
3
votes
3
replies
1.0k
views
limma decideTests: only p-value less than (but not equal to) alpha are flagged as significant
limma
edger
significance
rnaseq
updated 7.2 years ago by
Gordon Smyth
50k • written 7.2 years ago by
roberto.spreafico
▴ 20
1
vote
4
replies
1.4k
views
comparing transcripts expression between conditions
salmon
transcripts
significance
counts
7.8 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
2.6k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 7.9 years ago by
Michael Love
42k • written 7.9 years ago by
aziza
▴ 20
0
votes
0
replies
849
views
cell analysis- significance output perturbed in shiny environment
cellcode
significance
8.0 years ago
christopher.clarskon15
▴ 20
6 results • Page
1 of 1
Recent ...
Replies
Comment: deseq2 results
by
swbarnes2
★ 1.3k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …
Votes
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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