Showing : snapcgh • reset
0
votes
8
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2.1k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.6 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
votes
7
replies
1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
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5
replies
1.9k
views
snapCGH, runBioHMM, Error: segfault from C stack overflow
snapCGH snapCGH
updated 14.2 years ago by ▴ 150 • written 14.2 years ago by ▴ 100
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
votes
4
replies
1.5k
views
snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.0 years ago by ▴ 160 • written 15.0 years ago by ★ 1.1k
0
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4
replies
1.2k
views
snapCGH_error in plotting segmentation
snapCGH snapCGH
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 340
0
votes
4
replies
1.0k
views
CGH HomHMM problem and how to debug
Cancer snapCGH Cancer snapCGH
17.2 years ago Daniel Brewer ★ 1.9k
0
votes
3
replies
1.2k
views
snapCGH: T instead of TRUE, etc
Cancer snapCGH Cancer snapCGH
17.2 years ago Ramon Diaz ★ 1.1k
2
votes
2
replies
1.3k
views
snapCGH segmentation fault
snapcgh software error
updated 8.5 years ago by ▴ 70 • written 8.5 years ago by • 0
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.1 years ago by ▴ 450 • written 14.1 years ago by ▴ 80
0
votes
2
replies
1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
16.9 years ago Ian Roberts ▴ 70
0
votes
2
replies
958
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 90
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votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
0
votes
2
replies
2.0k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 17.7 years ago by ★ 13k • written 17.7 years ago by ▴ 310
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2
replies
1.1k
views
snapCGH package not loaded
snapCGH snapCGH
updated 14.3 years ago by ▴ 20 • written 14.2 years ago by ▴ 500
0
votes
1
reply
981
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.6 years ago by ▴ 310 • written 17.6 years ago by ▴ 30
0
votes
1
reply
974
views
SnapCGH problem
Cancer snapCGH Cancer snapCGH
17.3 years ago Daniel Brewer ★ 1.9k
0
votes
1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.9 years ago by ▴ 70 • written 16.9 years ago by ★ 1.9k
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 110
0
votes
1
reply
898
views
snapCGH doesn't work: unable to load shared library ...
snapCGH snapCGH
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
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0
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835
views
snapCGH and Nimblegen arrays
Cancer snapCGH Cancer snapCGH
16.0 years ago Gareth Wilson ▴ 10
0
votes
0
replies
1.0k
views
general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
14.7 years ago Wolfgang RAFFELSBERGER ▴ 140
0
votes
0
replies
1.0k
views
problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
14.7 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
949
views
snapCGH and processCGH
snapCGH snapCGH
14.6 years ago lakshmi dhevi ▴ 10
0
votes
0
replies
786
views
snapCGH - could not find function "readPositionalInfo"
GUI snapCGH GUI snapCGH
14.6 years ago Kristian Almstrup ▴ 10
0
votes
0
replies
1.1k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
14.3 years ago Daniel Rico ▴ 110
0
votes
0
replies
851
views
problem with analyzing human 244k agilent array with snapCGH
Annotation Cancer snapCGH Annotation Cancer snapCGH
16.1 years ago Sean Davis 21k
0
votes
0
replies
680
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
16.7 years ago Lyudmila Mikhaylova ▴ 20
0
votes
0
replies
832
views
Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
16.9 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
749
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
16.9 years ago Ian Roberts ▴ 70
0
votes
0
replies
921
views
Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
8.7 years ago Cian Murphy ▴ 40
0
votes
0
replies
850
views
problem with readPositionalInfo() for Nimblegen for ArrayCGH
snapCGH cghMCR snapCGH cghMCR
12.8 years ago Muksitul Haque ▴ 10
0
votes
0
replies
848
views
snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
10.9 years ago Juliet Hannah ▴ 360
0
votes
0
replies
1.2k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
10.8 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
0
votes
0
replies
701
views
snapCGH plotting
GO graph snapCGH GO graph snapCGH
14.7 years ago Boris Umylny ▴ 120
0
votes
0
replies
756
views
error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
15.0 years ago Wolfgang Raffelsberger ▴ 160
40 results • Page 1 of 1
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Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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