Showing : snpStats • reset
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
2.4 years ago Anastasiia • 0
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0
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729
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.1 years ago Amber • 0
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606
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Coercion of a numeric matrix into a SnpMatrix
snpStats
4.2 years ago schandry • 0
0
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1
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930
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
5.8 years ago GENOMIC_region • 0
1
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1
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1.2k
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reading ped error when using the snpStats library
snpstats ped file R
6.5 years ago kzelaya2 ▴ 10
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1.0k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.2 years ago natalie.jean.mcdonald • 0
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0
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1.0k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
7.9 years ago carlos.ruiz • 0
1
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1
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1.6k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
8.5 years ago TimothéeFlutre ▴ 80
1
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2
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1.8k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.2 years ago remi.tournebize ▴ 10
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1.3k
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snp analysis GWAS
snpstats
updated 9.4 years ago by ★ 13k • written 9.4 years ago by • 0
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1.7k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
9.5 years ago vickygarfield87 • 0
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1.0k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.5 years ago vickygarfield87 • 0
0
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1
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1.6k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 9.9 years ago by 6.7k • written 9.9 years ago by ★ 13k
0
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3
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1.7k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.3 years ago by 6.7k • written 10.3 years ago by ▴ 50
0
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1
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1.6k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
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2.0k
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Plink Data for Fst Calculations
snpStats snpStats
10.4 years ago Voke AO ▴ 760
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3
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1.1k
views
SNPstats package bug report
snpStats snpStats
10.4 years ago Guest User ★ 13k
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0
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1.8k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
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1.1k
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snpStats Fst Implementation
snpStats snpStats
10.6 years ago Voke AO ▴ 760
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1
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1.4k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 10
0
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1
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1.3k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.3 years ago by 6.7k • written 11.3 years ago by ▴ 60
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0
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1.0k
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statistics from snpStats objects
SNP snpStats SNP snpStats
11.9 years ago james power ▴ 10
0
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3
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2.8k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 20
0
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4
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1.5k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 30
0
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2
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1.4k
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Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 12.6 years ago by 25k • written 12.6 years ago by ★ 4.2k
25 results • Page 1 of 1
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Comment: Store output of matchPWM() by James W. MacDonald 65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient by JKim • 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Comment: Store output of matchPWM() by mat149 ▴ 70
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…
Answer: Store output of matchPWM() by James W. MacDonald 65k
Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …
Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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