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gwas
•
reset
0
votes
4
replies
113
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
7 days ago • updated 6 days ago
Weiqiong
• 0
0
votes
0
replies
248
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
9 months ago
Sarah
• 0
0
votes
0
replies
266
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
9 months ago
helene.ruffieux
• 0
0
votes
0
replies
309
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
12 months ago
helene.ruffieux
• 0
0
votes
0
replies
277
views
gwas power calculation for quantitative traits
power
GWAS
19 months ago
rajya82
• 0
1
vote
2
replies
2.7k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 2.1 years ago by
Anna
• 0 • written 3.3 years ago by
solanum
• 0
0
votes
0
replies
513
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
3.0 years ago
jiyeon.choi2
• 0
0
votes
3
replies
698
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 3.6 years ago by
mconomos
▴ 70 • written 3.7 years ago by
ferranpauls10
• 0
0
votes
0
replies
467
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
4.1 years ago
pwjeffries
• 0
0
votes
1
reply
600
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
4.1 years ago
naglemi
▴ 10
1
vote
1
reply
572
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 4.3 years ago by
mconomos
▴ 70 • written 4.3 years ago by
naglemi
▴ 10
0
votes
1
reply
603
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 4.5 years ago by
zhengx
▴ 30 • written 4.5 years ago by
naglemi
▴ 10
0
votes
0
replies
579
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
4.6 years ago
zhu
• 0
0
votes
3
replies
776
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 4.6 years ago by
mconomos
▴ 70 • written 4.7 years ago by
naglemi
▴ 10
3
votes
4
replies
868
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 4.7 years ago by
mconomos
▴ 70 • written 4.7 years ago by
naglemi
▴ 10
0
votes
1
reply
542
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
4.7 years ago
GENOMIC_region
• 0
0
votes
0
replies
798
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
5.7 years ago
IV
▴ 30
2
votes
0
replies
1.1k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
6.8 years ago
enridomenici
▴ 10
0
votes
0
replies
850
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
7.6 years ago
Vincent J. Carey, Jr.
6.6k
19 results • Page
1 of 1
Recent ...
Replies
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
by
tahir.msajid
• 0
Hi Rory, I came up with another question while analyzing my data. A scenario of analysis: Path to bam files, path to peaks files (broad pe…
Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
by
Yang Shi
▴ 10
Thanks for your reply sir! Here is the data ([EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv][1]). And there is the data process…
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
by
davidhillis
• 0
Thank you!
Comment: Time-course, comparison of two groups
by
boczniak767
▴ 720
Thank you Gordon for your time and patience, I'd try to be more specific. I've read carefully the three first chapters of `edgeR` user guid…
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
by
James W. MacDonald
62k
This works for me. ``` > library(VariantAnnotation) > library(TxDb.Hsapiens.UCSC.hg19.knownGene) > txdb <- TxDb.Hsapiens.UCSC.hg19.knownGe…
Votes
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
A: Pathway analysis of differentially methylated CpGs
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
Answer: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
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