Showing : snpstats • reset
1
vote
2
replies
1.3k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
2.4 years ago Anastasiia • 0
0
votes
0
replies
726
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.1 years ago Amber • 0
0
votes
0
replies
602
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.2 years ago schandry • 0
0
votes
1
reply
926
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
5.8 years ago GENOMIC_region • 0
1
vote
1
reply
1.2k
views
reading ped error when using the snpStats library
snpstats ped file R
6.5 years ago kzelaya2 ▴ 10
0
votes
0
replies
1.0k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.1 years ago natalie.jean.mcdonald • 0
1
vote
0
replies
1.0k
views
Error when computing ld with snpStats in big samples
software error snpstats `ld
7.9 years ago carlos.ruiz • 0
1
vote
1
reply
1.6k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
8.4 years ago TimothéeFlutre ▴ 80
1
vote
2
replies
1.8k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.2 years ago remi.tournebize ▴ 10
0
votes
1
reply
1.3k
views
snp analysis GWAS
snpstats
updated 9.4 years ago by ★ 13k • written 9.4 years ago by • 0
0
votes
0
replies
1.7k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
9.5 years ago vickygarfield87 • 0
0
votes
0
replies
997
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.5 years ago vickygarfield87 • 0
0
votes
1
reply
1.6k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 9.9 years ago by 6.7k • written 9.9 years ago by ★ 13k
0
votes
3
replies
1.6k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.3 years ago by 6.7k • written 10.3 years ago by ▴ 50
0
votes
1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
0
votes
0
replies
2.0k
views
Plink Data for Fst Calculations
snpStats snpStats
10.4 years ago Voke AO ▴ 760
0
votes
3
replies
1.1k
views
SNPstats package bug report
snpStats snpStats
10.4 years ago Guest User ★ 13k
0
votes
0
replies
1.8k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.1k
views
snpStats Fst Implementation
snpStats snpStats
10.6 years ago Voke AO ▴ 760
0
votes
1
reply
1.4k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 10
0
votes
1
reply
1.3k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.3 years ago by 6.7k • written 11.3 years ago by ▴ 60
0
votes
0
replies
1.0k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
11.9 years ago james power ▴ 10
0
votes
3
replies
2.8k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 20
0
votes
4
replies
1.5k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.1 years ago by ▴ 20 • written 12.1 years ago by ▴ 30
0
votes
2
replies
1.4k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 12.5 years ago by 25k • written 12.5 years ago by ★ 4.2k
25 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
United States, just now
United States, just now
France, 7 minutes ago
WEHI, Melbourne, Australia, 11 minutes ago
EMBL Heidelberg, 24 minutes ago
Traffic: 1107 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6