Bioconductor SsGSEA

Showing : ssGSEA • reset

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enrichment GSVA ssGSEA

updated 13 months ago by Tyler Sagendorf ▴ 10 • written 14 months ago by Bob ▴ 30

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ssgsea GSVA gsea

updated 15 months ago by Axel Klenk ★ 1.1k • written 15 months ago by Bioinformagician • 0

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DESeq2 GSVA ssGSEA

updated 18 months ago by Robert Castelo ★ 3.4k • written 18 months ago by michelafrancesconi8 • 0

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ssgsea GSVA biotype proteincoding msigdb

updated 14 months ago by tifaGis • 0 • written 2.0 years ago by snijesh ▴ 200

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enrichment GSVA enrichplot ssGSEA

updated 3.7 years ago by Robert Castelo ★ 3.4k • written 3.7 years ago by Davide • 0

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gsea ssgsea gsva pathways

updated 5.4 years ago by Robert Castelo ★ 3.4k • written 5.4 years ago by igor ▴ 50

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ssgsea gsva piano egsea

updated 24 months ago by amin8w ▴ 10 • written 8.4 years ago by sina.nassiri ▴ 130

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gsea gsva ssgsea

7.8 years ago jaison75 ▴ 20

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gsva ssgsea

10.0 years ago Momeneh Foroutan ▴ 10

9 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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