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stager
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0
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10
replies
2.1k
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Two treatments, one control
DESeq2
stageR
16 months ago
alephreish
• 0
0
votes
2
replies
856
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
2.0 years ago
jbono
▴ 10
0
votes
1
reply
927
views
stageR p-adj values of zero
stageR
updated 4.1 years ago by
Koen Van den Berge
▴ 180 • written 4.1 years ago by
giwa.ao
• 0
0
votes
1
reply
1.3k
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stageR with input from DRIMSeq
DRIMSeq
stageR
updated 6.7 years ago by
Koen Van den Berge
▴ 180 • written 6.7 years ago by
sdvie
• 0
2
votes
4
replies
2.2k
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stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
6.8 years ago
d-joester
▴ 20
4
votes
4
replies
1.8k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 6.8 years ago by
Koen Van den Berge
▴ 180 • written 6.8 years ago by
maltethodberg
▴ 180
0
votes
3
replies
1.6k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
Jack.Hearn
• 0
1
vote
5
replies
2.2k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
rbenel
▴ 50
2
votes
9
replies
2.5k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 7.3 years ago by
Koen Van den Berge
▴ 180 • written 7.3 years ago by
fiona.dick91
▴ 60
9 results • Page
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There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
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jamie.gearing
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Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
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Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
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I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/ [fnf][1] …
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Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
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