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subjunc
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9
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2.8k
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News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.5 years ago
Wei Shi
★ 3.6k
3
votes
1
reply
1.5k
views
Use BAM file created from subjunc function (Rsubread package) for feature counts?
rsubread
subjunc
updated 8.7 years ago by
Wei Shi
★ 3.6k • written 8.7 years ago by
Stephen Piccolo
▴ 590
3
votes
6
replies
2.3k
views
How to use subjunc for differential splicing analysis?
subjunc
edgeR
2.3 years ago
Assa Yeroslaviz
★ 1.5k
2
votes
2
replies
1.2k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 9.5 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
daniel.silvestre
▴ 100
1
vote
5
replies
2.4k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
abano
• 0
0
votes
2
replies
586
views
'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 10 months ago by
ATpoint
★ 4.1k • written 10 months ago by
Sukeerthi
• 0
0
votes
1
reply
1.3k
views
How to interpret the fusion.txt file output from subjunc (Rsubread package)
rsubread
subjunc
rnaseq
fusion genes
updated 8.8 years ago by
Wei Shi
★ 3.6k • written 8.8 years ago by
misic
• 0
7 results • Page
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Comment: Method to find pathways different between 2 groups
by
Chris
• 0
Sorry for not clear. I just try to find papers use this method for learning purpose.
Comment: Improving the design matrices vignette in RNAseq123
by
Lluís Revilla Sancho
▴ 730
Cool. Thanks for looking into it.
Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…
Votes
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
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ATpoint
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