Showing : sushi • reset
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1.1k
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Plotting bed8 with Sushi possible?
sushi bed
7.1 years ago maltethodberg ▴ 180
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948
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plotGenes command Sushi
sushi plotGenes
7.8 years ago portia.mcghan • 0
1
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1.2k
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Issues with Sushi manhattanPlot function, cannot plot p-values
sushi
9.1 years ago snamjoshi87 ▴ 40
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1
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1.5k
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plotBed R data frame - last line plotted with line 1
sushi plotBed data.frame
9.6 years ago waqasnayab • 0
1
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1
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1.5k
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Adding legends to sushi plots produced using plotBed function
sushi plotBed
updated 9.6 years ago by ▴ 10 • written 9.8 years ago by ▴ 80
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1
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1.2k
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Sushi example data not correct?
Sushi
updated 9.6 years ago by ▴ 10 • written 9.6 years ago by ▴ 30
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3
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2.5k
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Plotting gene region using Sushi
R sushi
updated 9.8 years ago by ▴ 10 • written 9.8 years ago by • 0
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2
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2.0k
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ploting HiC data with Sushi
sushi
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ▴ 670
8 results • Page 1 of 1
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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