Showing : sushi • reset
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Plotting bed8 with Sushi possible?
sushi bed
7.3 years ago maltethodberg ▴ 180
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991
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plotGenes command Sushi
sushi plotGenes
8.0 years ago portia.mcghan • 0
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1.3k
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Issues with Sushi manhattanPlot function, cannot plot p-values
sushi
9.3 years ago snamjoshi87 ▴ 40
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1
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1.7k
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plotBed R data frame - last line plotted with line 1
sushi plotBed data.frame
9.8 years ago waqasnayab • 0
1
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1
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1.5k
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Adding legends to sushi plots produced using plotBed function
sushi plotBed
updated 9.8 years ago by ▴ 10 • written 10.0 years ago by ▴ 80
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1
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1.3k
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Sushi example data not correct?
Sushi
updated 9.8 years ago by ▴ 10 • written 9.9 years ago by ▴ 30
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3
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2.7k
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Plotting gene region using Sushi
R sushi
updated 10.0 years ago by ▴ 10 • written 10.0 years ago by • 0
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2
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2.1k
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ploting HiC data with Sushi
sushi
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ▴ 670
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Good point, I hadn't considered the fact quantitative `time` implies a (logit-)linear response *to* time. You're correct that I haven't exp…
Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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