Bioconductor Sushi

Showing : sushi • reset

votes

replies

1.1k

views

sushi bed

6.9 years ago maltethodberg ▴ 180

votes

replies

927

views

sushi plotGenes

7.6 years ago portia.mcghan • 0

vote

replies

1.2k

views

sushi

8.9 years ago snamjoshi87 ▴ 40

votes

1.4k

views

sushi plotBed data.frame

9.4 years ago waqasnayab • 0

vote

1.4k

views

sushi plotBed

updated 9.4 years ago by dphansti ▴ 10 • written 9.6 years ago by Dimitris Polychronopoulos ▴ 80

votes

1.2k

views

Sushi

updated 9.4 years ago by dphansti ▴ 10 • written 9.5 years ago by Till ▴ 30

votes

replies

2.5k

views

R sushi

updated 9.6 years ago by dphansti ▴ 10 • written 9.6 years ago by javier.mendoza • 0

votes

replies

1.9k

views

sushi

updated 10.0 years ago by Steve Lianoglou ★ 13k • written 10.0 years ago by Bogdan ▴ 670

8 results • Page 1 of 1

Recent ...

Replies

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Awards • All

Popular Question to Robert Castelo ★ 3.4k