Bioconductor Sushi

Showing : sushi • reset

votes

replies

1.1k

views

sushi bed

7.1 years ago maltethodberg ▴ 180

votes

replies

947

views

sushi plotGenes

7.8 years ago portia.mcghan • 0

vote

replies

1.2k

views

sushi

9.1 years ago snamjoshi87 ▴ 40

votes

1.5k

views

sushi plotBed data.frame

9.6 years ago • updated 9.5 years ago waqasnayab • 0

vote

1.5k

views

sushi plotBed

updated 9.6 years ago by dphansti ▴ 10 • written 9.8 years ago by Dimitris Polychronopoulos ▴ 80

votes

1.2k

views

Sushi

updated 9.6 years ago by dphansti ▴ 10 • written 9.6 years ago by Till ▴ 30

votes

replies

2.5k

views

R sushi

updated 9.8 years ago by dphansti ▴ 10 • written 9.8 years ago by javier.mendoza • 0

votes

replies

2.0k

views

sushi

updated 10.2 years ago by Steve Lianoglou ★ 13k • written 10.2 years ago by Bogdan ▴ 670

8 results • Page 1 of 1

Recent ...

Replies

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Awards • All

Popular Question to edward.esiribloom • 0

Popular Question to Fred Hutch (Recruiting) ▴ 40