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sushi
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787
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Plotting bed8 with Sushi possible?
sushi
bed
5.6 years ago
maltethodberg
▴ 180
0
votes
0
replies
729
views
plotGenes command Sushi
sushi
plotGenes
6.3 years ago
portia.mcghan
• 0
1
vote
0
replies
985
views
Issues with Sushi manhattanPlot function, cannot plot p-values
sushi
7.6 years ago
snamjoshi87
▴ 40
0
votes
1
reply
1.1k
views
plotBed R data frame - last line plotted with line 1
sushi
plotBed
data.frame
8.0 years ago
waqasnayab
• 0
0
votes
1
reply
969
views
Sushi example data not correct?
Sushi
updated 8.1 years ago by
dphansti
▴ 10 • written 8.1 years ago by
Till
▴ 30
1
vote
1
reply
1.1k
views
Adding legends to sushi plots produced using plotBed function
sushi
plotBed
updated 8.1 years ago by
dphansti
▴ 10 • written 8.3 years ago by
Dimitris Polychronopoulos
▴ 80
0
votes
3
replies
2.0k
views
Plotting gene region using Sushi
R
sushi
updated 8.3 years ago by
dphansti
▴ 10 • written 8.3 years ago by
javier.mendoza
• 0
0
votes
2
replies
1.6k
views
ploting HiC data with Sushi
sushi
updated 8.7 years ago by
Steve Lianoglou
★ 13k • written 8.7 years ago by
Bogdan
▴ 670
8 results • Page
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Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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