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error lazy R biomaRt table

updated 22 months ago by juo5 • 0 • written 2.2 years ago by Abhishek ▴ 20

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2

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cn.mops log normalized counts table

updated 8.5 years ago by Günter Klambauer ▴ 540 • written 8.5 years ago by falk.zakrzewski • 0

0

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rle normalization table

updated 10.2 years ago by Steve Lianoglou ★ 13k • written 10.2 years ago by aiko • 0

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Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0

@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…

Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0

Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …

Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 20

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

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C: ControlGenes/ housekeeping genes Deseq2

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Commentator to James W. MacDonald 68k

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