Bioconductor Tcgautils

Showing : tcgautils • reset

votes

803

views

normalization RNASEQ Normalization TCGAutils TCGA

updated 24 months ago by ATpoint ★ 4.5k • written 24 months ago by Deniz • 0

votes

replies

2.1k

views

MultiAssayExperiment curatedTCGAData TCGAutils

4.0 years ago svlachavas ▴ 830

votes

replies

1.4k

views

MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.0 years ago by Marcel Ramos 700 • written 4.0 years ago by svlachavas ▴ 830

votes

replies

1.5k

views

MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.0 years ago by Marcel Ramos 700 • written 4.1 years ago by svlachavas ▴ 830

votes

replies

4.6k

views

TCGAutils TCGAbiolinks GenomicDataCommons

updated 5.4 years ago by Marcel Ramos 700 • written 5.4 years ago by Dario Strbenac ★ 1.5k

votes

891

views

TCGAutils

updated 5.6 years ago by Levi Waldron ★ 1.1k • written 5.6 years ago by vittorio.fortino • 0

votes

replies

1.6k

views

TCGAutils multiassayexperiment coad

updated 6.4 years ago by Marcel Ramos 700 • written 6.4 years ago by mario.zanfardino ▴ 160

7 results • Page 1 of 1

Recent ...

Replies

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Votes

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

Awards • All