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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Debebe • 0

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618

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 17 months ago by Michael Love 41k • written 18 months ago by arshad1292 • 0

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786

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time-series mfuzz replace=FALSE

23 months ago soda ▴ 80

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half-life DESeq2 time-series

updated 3.1 years ago by Michael Love 41k • written 3.1 years ago by Xianjun Dong ▴ 10

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1.9k

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deseq2 cancer rna-seq time-series

4.8 years ago mah19 • 0

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2.8k

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deseq2 time-series design matrix edger

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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deseq2 time-series without replicate

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by bahlv • 0

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1.3k

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deseq2 timecourse multiple time points time-series

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by zhangfei-123 • 0

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1.5k

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DESeq2 time-series

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by gtechbio ▴ 10

9 results • Page 1 of 1

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Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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