Showing : time-series • reset
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Time-series RNA-seq analysis using DESeq2
time-series DESeq2 RNASeq timecoursedata TimeCourse
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
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1
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612
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Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2 time-series timecoursedata timecourse multifactorial
updated 17 months ago by 41k • written 18 months ago by • 0
0
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2
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780
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R: problem with running time-series analysis software: Mfuzz
time-series mfuzz replace=FALSE
23 months ago soda ▴ 80
0
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1
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816
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DEseq2 to test half-life for time-series data
half-life DESeq2 time-series
updated 3.0 years ago by 41k • written 3.1 years ago by ▴ 10
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5
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1.8k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.8 years ago mah19 • 0
2
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10
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2.8k
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Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 5.2 years ago by 41k • written 5.2 years ago by ★ 1.5k
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3
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1.0k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
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4
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Analysis Time course data using DESeq2
deseq2 timecourse multiple time points time-series
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
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5
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1.5k
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Time course DE analysis in DESeq2 with Wald test
DESeq2 time-series
updated 6.5 years ago by 41k • written 6.5 years ago by ▴ 10
9 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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