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time-series
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Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
Debebe
• 0
0
votes
1
reply
618
views
Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 17 months ago by
Michael Love
41k • written 18 months ago by
arshad1292
• 0
0
votes
2
replies
787
views
R: problem with running time-series analysis software: Mfuzz
time-series
mfuzz
replace=FALSE
23 months ago
soda
▴ 80
0
votes
1
reply
820
views
DEseq2 to test half-life for time-series data
half-life
DESeq2
time-series
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
Xianjun Dong
▴ 10
0
votes
5
replies
1.9k
views
RNA-seq time course analysis with only one experimental condition
deseq2
cancer
rna-seq
time-series
4.8 years ago
mah19
• 0
2
votes
10
replies
2.8k
views
Time-series analysis with DESeq2
deseq2
time-series
design matrix
edger
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
1.0k
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
bahlv
• 0
1
vote
4
replies
1.3k
views
Analysis Time course data using DESeq2
deseq2
timecourse
multiple time points
time-series
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
zhangfei-123
• 0
1
vote
5
replies
1.5k
views
Time course DE analysis in DESeq2 with Wald test
DESeq2
time-series
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
gtechbio
▴ 10
9 results • Page
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Votes
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
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