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timecoursedata
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3
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13
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1.3k
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Timely differentially expressed genes
timecoursedata
limma
7 months ago • updated 5 months ago
triZZla
• 0
1
vote
6
replies
893
views
Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Debebe
• 0
0
votes
1
reply
494
views
DESeq2, Timecourse using fitted splines
timecoursedata
RNASeqData
TimeCourse
DESeq2
updated 9 months ago by
Michael Love
41k • written 9 months ago by
georgii.vdovin
• 0
0
votes
0
replies
474
views
Plot profiles for each group - spline analysis in edgeR
timecoursedata
edgeR
updated 13 months ago by
Gordon Smyth
50k • written 13 months ago by
boczniak767
▴ 720
0
votes
2
replies
631
views
DESeq2 replicates in time course data
DESeq2
timecoursedata
replicates
updated 14 months ago by
Michael Love
41k • written 14 months ago by
fepesanz8
• 0
0
votes
1
reply
611
views
Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 17 months ago by
Michael Love
41k • written 18 months ago by
arshad1292
• 0
0
votes
0
replies
954
views
Job:
Biostatistics Research Associate, York, UK
QTL
fourier
TimeSeriesExperiment
timecoursedata
3.0 years ago
Daphne
• 0
0
votes
3
replies
1.4k
views
Find DEPs among TMT labeling proteom time course data by limma
limma
proteomics
TMTlabeling
timecoursedata
updated 3.5 years ago by
SamGG
▴ 350 • written 3.5 years ago by
maleknias
• 0
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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