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upgrade
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Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
3
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11
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14k
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Problems updating Bioconductor with R 3.2.0
upgrade
r update
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
daniil.sarkisyan
▴ 10
2
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1
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4.6k
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Upgrade to Bioconductor 3.4 - problems with R
r update
upgrade
bioclite
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
Lna
• 0
1
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4
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1.1k
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Problem with Upgrade to Bioconductor 3.8 on Scientific linux (CentOS) 7
upgrade
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
zacekm
▴ 10
1
vote
3
replies
1.3k
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R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade
BiocManager
updated 4.5 years ago by
Martin Morgan
25k • written 4.5 years ago by
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.1k
views
New Version of DexSEQ
upgrade
new version
backwards compatibility
updated 9.2 years ago by
Steve Lianoglou
★ 13k • written 9.2 years ago by
jrdemasi
• 0
0
votes
1
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2.4k
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Error while trying to upgrade R to version 3.2
bioconductor
upgrade
installr
Windows8
R 3.2
9.0 years ago
svlachavas
▴ 830
7 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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