Biostar Variance

Showing : variance • reset

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417

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limma treatment variance

updated 2.6 years ago by Gordon Smyth 46k • written 2.6 years ago by ML18 ▴ 10

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378

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deseq2 vst variance

updated 3.2 years ago by Michael Love 37k • written 3.2 years ago by Bitao Qiu • 0

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732

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variance formula expression

updated 3.6 years ago by mikhael.manurung ▴ 260 • written 3.6 years ago by rina ▴ 20

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449

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deseq2 variance genes

updated 4.7 years ago by Michael Love 37k • written 4.7 years ago by hs.lansdell ▴ 10

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3.6k

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deseq2 counts DESeqtransform variance deviation

updated 4.8 years ago by Michael Love 37k • written 4.8 years ago by Casper Peters • 0

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1.0k

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deseq2 variance lrt differential gene expression

updated 5.4 years ago by Ryan C. Thompson 7.8k • written 5.4 years ago by rclaire ▴ 20

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960

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pca variance deseq2 gene_id

updated 6.2 years ago by Michael Love 37k • written 6.2 years ago by NMostajo ▴ 10

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1.7k

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limma arrayWeights variance sampleQuality microarray

updated 6.8 years ago by Ryan C. Thompson 7.8k • written 6.9 years ago by svlachavas ▴ 800

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Comment: Conversion of UniProt to Ensembl by Marcel Ramos 570

Note that this can also be done via the `UniProt.ws` package: ```r library(UniProt.ws) up <- UniProt.ws() univals <- head(keys(up, "UniPro…

Comment: errors in annotation by Josie • 0

And there's obviously nothing wrong with it either. Thanks again for your help.

Comment: errors in annotation by James W. MacDonald 60k

Looking closer at `mygene`, it doesn't appear to use any of the `OrgDb` packages at all, but instead is hitting the mygene.info REST server…

Comment: errors in annotation by Josie • 0

OMG. You're absolutely correct. I inadvertently created the error when changing all the genes with no name (NA) to blank spaces in Excel. …

Comment: errors in annotation by James W. MacDonald 60k

Wait a minute. I took you at your word that there was a problem, without checking myself. ``` > select(org.Bt.eg.db, c("281667","505987","…

Votes

Comment: Bioconductor teaching week

enhancedVolcano: Why are only a few of my select labels showing up?

A: Differential expression of RNA-seq data using limma and voom()

C: Differential expression of RNA-seq data using limma and voom()

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