Bioconductor VariancePartition

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variancePartition

21 days ago Le • 0

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variancePartition BiocParallel

4 months ago hayleyw • 0

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 5 months ago by Gordon Smyth 50k • written 7 months ago by Gimena • 0

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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RNAseq variancePartition edgeR dream

14 months ago DH • 0

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variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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expression variancePartition edgeR

21 months ago Jonathan • 0

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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limma variancePartition

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by jarod ▴ 30

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BiocParallel limma variancePartition

3.0 years ago • updated 2.9 years ago Junghoon ▴ 10

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796

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variancePartition limma

3.0 years ago Junghoon ▴ 10

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1.1k

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variancePartition limma BiocParallel

3.0 years ago Junghoon ▴ 10

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.9 years ago by Ben ▴ 50

16 results • Page 1 of 1

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Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go! And for comparisons between the cohorts I presume duplicateCorrelation with standar…

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k

Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…

Comment: Log-cpm values from limma by Gordon Smyth 50k

No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …

Comment: Extremely small p-values using Limma for proteomic data by Abbey • 0

This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …

Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

Probably. I would not expect such large fold changes. But without seeing your code, who knows?

Votes

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie

Answer: Extremely small p-values using Limma for proteomic data

Bioconductor 3.19 is Released!

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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