Bioconductor VariancePartition

Showing : variancePartition • reset

votes

replies

2.4k

views

dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

votes

replies

1.7k

views

limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.8 years ago by Ben ▴ 50

votes

replies

1.5k

views

variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

vote

replies

1.2k

views

limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.9 years ago by jarod ▴ 30

vote

replies

600

views

variancePartition BiocParallel

4 months ago hayleyw • 0

vote

replies

209

views

variancePartition

15 days ago Le • 0

vote

replies

790

views

variancePartition limma

3.0 years ago Junghoon ▴ 10

vote

replies

1.5k

views

DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

vote

1.3k

views

edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

vote

replies

829

views

variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 5 months ago by Gordon Smyth 50k • written 6 months ago by Gimena • 0

vote

replies

687

views

RNAseq variancePartition edgeR dream

13 months ago DH • 0

votes

1.1k

views

variancePartition limma BiocParallel

3.0 years ago Junghoon ▴ 10

votes

replies

837

views

variancePartition mixedmodel dream

8 months ago hayleyw • 0

votes

replies

451

views

expression variancePartition edgeR

20 months ago Jonathan • 0

votes

replies

956

views

variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

votes

1.1k

views

BiocParallel limma variancePartition

3.0 years ago • updated 2.9 years ago Junghoon ▴ 10

16 results • Page 1 of 1

Recent ...

Replies

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Votes

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Awards • All