Bioconductor Wald

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584

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DESeq2 LRT Wald

updated 3 months ago by James W. MacDonald 67k • written 3 months ago by Eric • 0

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1.2k

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DESeq2 wald stat

updated 2.2 years ago by Peter Hickey ▴ 740 • written 2.2 years ago by eve.olszanowski • 0

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1.8k

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etLRT WALD edgeR DESEq

updated 3.3 years ago by Michael Love 42k • written 3.3 years ago by aiswaryabioinfo • 0

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883

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deseq2 LRT wald

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by jnaviapelaez ▴ 10

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1.2k

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GENESIS zscore wald

updated 5.1 years ago by Stephanie M. Gogarten ▴ 870 • written 5.1 years ago by lassana.a.samarakoon ▴ 10

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2.1k

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deseq2 LRT WALD

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by annesoalvarez • 0

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1.5k

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deseq2 ribosome profiling wald lrt

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by indrik.wijaya ▴ 20

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4.3k

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rnaseq deseq2 lrt wald differential gene expression

updated 2.7 years ago by chm • 0 • written 7.2 years ago by chrysanthi.taxiarchi12 • 0

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2.8k

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deseq2 wald lrt genes significance

updated 8.4 years ago by Michael Love 42k • written 8.4 years ago by aziza ▴ 20

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19k

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deseq2 wald

updated 3.0 years ago by Michael Love 42k • written 9.7 years ago by deena ▴ 20

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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