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limma 2x2 factorial contrast.matrix
limma
weaver
limma
weaver
14.0 years ago
Ben Nota
▴ 10
0
votes
3
replies
967
views
interaction term contrast in Weaver mutant example of LIMMA manual
limma
weaver
limma
weaver
updated 14.6 years ago by
James W. MacDonald
65k • written 14.6 years ago by
Erika Melissari
▴ 250
0
votes
0
replies
1.2k
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO
weaver
GO
weaver
15.6 years ago
Elliot Kleiman
▴ 150
0
votes
1
reply
2.0k
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Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 15.9 years ago by
Wang, Jixin
▴ 130 • written 15.9 years ago by
Keith Satterley
▴ 450
0
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0
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969
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Limma user’s guide example data sets
Microarray
limma
weaver
Microarray
limma
weaver
15.9 years ago
Wang, Jixin
▴ 130
0
votes
0
replies
886
views
Limma - using both array and spot weights in lmFit
Genetics
limma
weaver
Genetics
limma
weaver
17.0 years ago
Gordon Smyth
50k
0
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0
replies
817
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Advice on how to compare two different sources on cDNA
limma
weaver
limma
weaver
17.3 years ago
Marcelo Laia
▴ 450
0
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1
reply
799
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limma example Weaver Data
limma
weaver
limma
weaver
18.9 years ago
Gordon Smyth
50k
0
votes
3
replies
1.3k
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limma example Weaver Data
limma
weaver
limma
weaver
updated 18.9 years ago by
Gordon Smyth
50k • written 18.9 years ago by
Wenbin Liu
▴ 100
0
votes
0
replies
952
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Controls and duplicate correlation
limma
weaver
limma
weaver
19.0 years ago
lepalmer@notes.cc.sunysb.edu
▴ 40
0
votes
3
replies
1.2k
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design in mixed ref and dye-swap experiment
limma
weaver
limma
weaver
updated 19.1 years ago by
Gordon Smyth
50k • written 19.1 years ago by
Silvano Piazza
▴ 50
0
votes
0
replies
2.4k
views
limma design matrix
GO
limma
PROcess
weaver
GO
limma
PROcess
weaver
20.2 years ago
Gordon Smyth
50k
0
votes
2
replies
1.0k
views
limma missing files
weaver
weaver
updated 21.0 years ago by
Gordon Smyth
50k • written 21.0 years ago by
Dick Beyer
★ 1.4k
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
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Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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