Biostar Zinbwave

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529

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edgeR DESeq2 single-cell scRNAseq zinbwave

updated 15 months ago by Aaron Lun ★ 27k • written 15 months ago by vincent.croset ▴ 20

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760

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DESeq2 ZINB zinbwave deseq

updated 18 months ago by Michael Love 37k • written 18 months ago by rowcyclecamp • 0

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273

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zinbwave PCA

22 months ago Assa Yeroslaviz ★ 1.5k

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624

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scRNA zinbwave batch IntegratedData

updated 22 months ago by davide risso ▴ 890 • written 22 months ago by Assa Yeroslaviz ★ 1.5k

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510

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 2.1 years ago by Michael Love 37k • written 2.1 years ago by vincent.croset ▴ 20

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1.8k

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 2.1 years ago by davide risso ▴ 890 • written 2.2 years ago by Wagaa ▴ 10

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1.3k

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zinbwave deseq2 vegan

updated 2.7 years ago by James W. MacDonald 60k • written 2.7 years ago by zcbthug • 0

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521

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deseq2 glm zinbwave ruvseq

updated 3.6 years ago by Michael Love 37k • written 3.6 years ago by Jakub ▴ 50

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Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C by ATpoint ★ 1.4k

Please provide an example of that sheet (at best after reading into R and then shared via `dput()`) if you are seeking help. In general the…

Comment: Which is the best type of data for correlation or survival analysis by Yang Shi • 0

Hi ATpoint, thanks for your reply and show me the thread. But there are still some questions: (1) **dds <- estimateSizeFactors(dds); ntd <…

Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C by swbarnes2 ★ 1.1k

Can't you just Google for a tutorial?

Comment: GSEA preranked analysis downstream of DEseq2 by hermidalc ▴ 10

Would using combining both as a ranking metric via `log2FC * -log10(p-value)` overcome these shortcomings? Or introduce new ones?

Comment: Which is the best type of data for correlation or survival analysis by ATpoint ★ 1.4k

Asked before: https://support.bioconductor.org/p/103464/

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Comment: what should be our references when 2 samples which I compare are treated and the