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Use minet for gene module detection
minet module
5.0 years ago zhang.jianhai ▴ 10
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Comment: C: Should the rlog normalised gene expression counts be further normalised?
5.0 years ago zhang.jianhai ▴ 10
1
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1.0k
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Should the rlog normalised gene expression counts be further normalised?
rlog CPM RKPM
updated 5.0 years ago by ★ 13k • written 5.0 years ago by ▴ 10
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2.3k
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Comment: C: KEGGREST mapping between genes and pathways
5.0 years ago zhang.jianhai ▴ 10
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0
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1.4k
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Comment: C: SummarizedExperiment no function found corresponding to methods exports from XVe
5.1 years ago zhang.jianhai ▴ 10
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2
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1.4k
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SummarizedExperiment no function found corresponding to methods exports from XVector for concatenateObjects
SummarizedExperiment
updated 5.1 years ago by 25k • written 5.1 years ago by ▴ 10
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1.1k
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Comment: C: BiocCheck package size
5.7 years ago zhang.jianhai ▴ 10
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2
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1.1k
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BiocCheck package size
BiocCheck
updated 5.7 years ago by 16k • written 5.7 years ago by ▴ 10
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1
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944
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Comment: C: Normalisation upstream rlog
5.7 years ago zhang.jianhai ▴ 10
0
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3
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944
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Normalisation upstream rlog
deseq2 rlog
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 10
0
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0
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908
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clusterProfiler GeneRatio minGSSize
enrichKEGG GeneRatio
5.9 years ago zhang.jianhai ▴ 10
0
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0
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2.3k
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Comment: C: KEGGREST mapping between genes and pathways
5.9 years ago zhang.jianhai ▴ 10
0
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1
reply
2.3k
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Comment: C: KEGGREST mapping between genes and pathways
5.9 years ago zhang.jianhai ▴ 10
0
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0
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2.3k
views
Comment: C: KEGGREST mapping between genes and pathways
5.9 years ago zhang.jianhai ▴ 10
0
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1
reply
2.3k
views
Comment: C: KEGGREST mapping between genes and pathways
5.9 years ago zhang.jianhai ▴ 10
1
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8
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2.3k
views
KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways
updated 5.9 years ago by 52k • written 5.9 years ago by ▴ 10
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0
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2.9k
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Comment: C: edgeR DEG glmQLFTest
5.9 years ago zhang.jianhai ▴ 10
0
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1
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2.9k
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Comment: C: edgeR DEG glmQLFTest
5.9 years ago zhang.jianhai ▴ 10
0
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1
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2.9k
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Comment: C: edgeR DEG glmQLFTest
5.9 years ago zhang.jianhai ▴ 10
0
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1
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2.9k
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Comment: C: edgeR DEG glmQLFTest
5.9 years ago zhang.jianhai ▴ 10
4
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7
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2.9k
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edgeR DEG glmQLFTest
glmQLFTest pvalue
updated 5.9 years ago by 52k • written 5.9 years ago by ▴ 10
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0
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1.0k
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Comment: C: edgeR DEG how many treatments should be fitted to GLM
5.9 years ago zhang.jianhai ▴ 10
2
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2
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1.0k
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edgeR DEG how many treatments should be fitted to GLM
edgeR GLM
updated 5.9 years ago by 52k • written 5.9 years ago by ▴ 10
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0
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5.4k
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Comment: C: p.adjust function fdr and BH
6.5 years ago zhang.jianhai ▴ 10
3
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2
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5.4k
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p.adjust function fdr and BH
fdr BH
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 10
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1
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1.8k
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Comment: C: rice annotation package
6.6 years ago zhang.jianhai ▴ 10
0
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0
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1.2k
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Comment: C: T-test in limma
6.6 years ago zhang.jianhai ▴ 10
3
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5
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1.8k
views
rice annotation package
rice annotation package
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 10
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1
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1.2k
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Comment: C: T-test in limma
6.6 years ago zhang.jianhai ▴ 10
0
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0
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829
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Comment: C: rice affymetrix qc() function
6.6 years ago zhang.jianhai ▴ 10
0
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1
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829
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Comment: C: rice affymetrix qc() function
6.6 years ago zhang.jianhai ▴ 10
0
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4
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829
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rice affymetrix qc() function
affymetrix qc
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 10
2
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4
replies
1.2k
views
T-test in limma
limma t test
updated 6.6 years ago by 52k • written 6.6 years ago by ▴ 10
2
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2
replies
1.5k
views
Can I ask questions on packages from CRAN?
package from CRAN
updated 7.4 years ago by ★ 6.8k • written 7.4 years ago by ▴ 10
0
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0
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744
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ggplot2 map color coded image with gene expression values.
ggplot2 choropleth maps
7.4 years ago zhang.jianhai ▴ 10
0
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0
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1.2k
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Comment: C: package "isa2", function isa.iterate()
7.5 years ago zhang.jianhai ▴ 10
0
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1
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1.2k
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Comment: C: package "isa2", function isa.iterate()
7.5 years ago zhang.jianhai ▴ 10
2
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4
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1.2k
views
package "isa2", function isa.iterate()
source code isa.iterate()
updated 7.5 years ago by ▴ 110 • written 7.5 years ago by ▴ 10
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0
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1.3k
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Comment: C: package eisa: object 'ath1121501ENTREZID' not found
7.6 years ago zhang.jianhai ▴ 10
2
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8
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1.3k
views
package eisa: object 'ath1121501ENTREZID' not found
object 'ath1121501ENTREZID' not found
updated 7.6 years ago by ★ 4.1k • written 7.6 years ago by ▴ 10
0
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0
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1.3k
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Comment: C: package eisa: object 'ath1121501ENTREZID' not found
7.6 years ago zhang.jianhai ▴ 10
0
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1
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1.3k
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Comment: C: package eisa: object 'ath1121501ENTREZID' not found
7.6 years ago zhang.jianhai ▴ 10
0
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0
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1.3k
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Comment: C: package eisa: object 'ath1121501ENTREZID' not found
7.6 years ago zhang.jianhai ▴ 10
0
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0
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1.3k
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Comment: C: package eisa: object 'ath1121501ENTREZID' not found
7.6 years ago zhang.jianhai ▴ 10
0
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0
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1.8k
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Comment: C: Package gcrma: unused argument (validate = FALSE)
7.6 years ago zhang.jianhai ▴ 10
0
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0
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1.8k
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Comment: C: Package gcrma: unused argument (validate = FALSE)
7.6 years ago zhang.jianhai ▴ 10
0
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0
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1.8k
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Comment: C: Package gcrma: unused argument (validate = FALSE)
7.6 years ago zhang.jianhai ▴ 10
0
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2
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1.8k
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Comment: C: Package gcrma: unused argument (validate = FALSE)
7.6 years ago zhang.jianhai ▴ 10
2
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7
replies
1.8k
views
Package gcrma: unused argument (validate = FALSE)
gcrma
updated 7.6 years ago by ★ 4.1k • written 7.6 years ago by ▴ 10
0
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0
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2.3k
views
Answer: A: edgeR multiple coeff in "lrt <- glmLRT(fit, coef=)"
7.6 years ago zhang.jianhai ▴ 10
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