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questions
0
votes
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replies
501
views
Use minet for gene module detection
minet module
4.3 years ago
zhang.jianhai
▴ 10
1
vote
2
replies
801
views
Should the rlog normalised gene expression counts be further normalised?
rlog
CPM
RKPM
updated 4.4 years ago by
Steve Lianoglou
★ 13k • written 4.4 years ago by
zhang.jianhai
▴ 10
0
votes
2
replies
1.2k
views
SummarizedExperiment no function found corresponding to methods exports from XVector for concatenateObjects
SummarizedExperiment
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
zhang.jianhai
▴ 10
0
votes
2
replies
902
views
BiocCheck package size
BiocCheck
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
zhang.jianhai
▴ 10
0
votes
3
replies
783
views
Normalisation upstream rlog
deseq2
rlog
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
zhang.jianhai
▴ 10
0
votes
0
replies
739
views
clusterProfiler GeneRatio minGSSize
enrichKEGG
GeneRatio
5.2 years ago
zhang.jianhai
▴ 10
1
vote
8
replies
2.0k
views
KEGGREST mapping between genes and pathways
keggrest
mapping genes to pathways
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
zhang.jianhai
▴ 10
4
votes
7
replies
2.4k
views
edgeR DEG glmQLFTest
glmQLFTest
pvalue
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
zhang.jianhai
▴ 10
2
votes
2
replies
867
views
edgeR DEG how many treatments should be fitted to GLM
edgeR
GLM
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
zhang.jianhai
▴ 10
3
votes
2
replies
4.6k
views
p.adjust function fdr and BH
fdr
BH
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
zhang.jianhai
▴ 10
3
votes
5
replies
1.5k
views
rice annotation package
rice annotation package
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
zhang.jianhai
▴ 10
0
votes
4
replies
695
views
rice affymetrix qc() function
affymetrix qc
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
zhang.jianhai
▴ 10
2
votes
4
replies
1.0k
views
T-test in limma
limma
t test
updated 6.0 years ago by
Gordon Smyth
50k • written 6.0 years ago by
zhang.jianhai
▴ 10
2
votes
2
replies
1.4k
views
Can I ask questions on packages from CRAN?
package from CRAN
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
zhang.jianhai
▴ 10
0
votes
0
replies
648
views
ggplot2 map color coded image with gene expression values.
ggplot2 choropleth maps
6.8 years ago
zhang.jianhai
▴ 10
2
votes
4
replies
1.1k
views
package "isa2", function isa.iterate()
source code
isa.iterate()
updated 6.8 years ago by
Haiying.Kong
▴ 110 • written 6.8 years ago by
zhang.jianhai
▴ 10
2
votes
8
replies
1.1k
views
package eisa: object 'ath1121501ENTREZID' not found
object 'ath1121501ENTREZID' not found
updated 6.9 years ago by
Guido Hooiveld
★ 3.9k • written 6.9 years ago by
zhang.jianhai
▴ 10
2
votes
7
replies
1.6k
views
Package gcrma: unused argument (validate = FALSE)
gcrma
updated 6.9 years ago by
Guido Hooiveld
★ 3.9k • written 6.9 years ago by
zhang.jianhai
▴ 10
0
votes
0
replies
1.1k
views
edgeR: mapping among ENSEMBL Enrtez and RefSeq.
mapping among ENSEMBL Enrtez and RefSeq.
6.9 years ago
zhang.jianhai
▴ 10
1
vote
2
replies
891
views
How to retrieve all logFCs fom "glmQLFTest()" output-edgeR?
edgeR "glmQLFTest()"
6.9 years ago
zhang.jianhai
▴ 10
1
vote
3
replies
2.1k
views
edgeR multiple coeff in "lrt <- glmLRT(fit, coef=)"
edger
6.9 years ago
zhang.jianhai
▴ 10
1
vote
3
replies
3.2k
views
Meaning of multiple coef in topTable, limma.
toptable coef
7.0 years ago
zhang.jianhai
▴ 10
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