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0
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Use minet for gene module detection
minet module
4.4 years ago zhang.jianhai ▴ 10
1
vote
2
replies
807
views
Should the rlog normalised gene expression counts be further normalised?
rlog CPM RKPM
updated 4.4 years ago by ★ 13k • written 4.4 years ago by ▴ 10
0
votes
2
replies
1.2k
views
SummarizedExperiment no function found corresponding to methods exports from XVector for concatenateObjects
SummarizedExperiment
updated 4.4 years ago by 25k • written 4.4 years ago by ▴ 10
0
votes
2
replies
916
views
BiocCheck package size
BiocCheck
updated 5.0 years ago by 16k • written 5.0 years ago by ▴ 10
0
votes
3
replies
787
views
Normalisation upstream rlog
deseq2 rlog
updated 5.1 years ago by 41k • written 5.1 years ago by ▴ 10
0
votes
0
replies
747
views
clusterProfiler GeneRatio minGSSize
enrichKEGG GeneRatio
5.2 years ago zhang.jianhai ▴ 10
1
vote
8
replies
2.0k
views
KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways
updated 5.2 years ago by 50k • written 5.2 years ago by ▴ 10
4
votes
7
replies
2.4k
views
edgeR DEG glmQLFTest
glmQLFTest pvalue
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 10
2
votes
2
replies
876
views
edgeR DEG how many treatments should be fitted to GLM
edgeR GLM
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 10
3
votes
2
replies
4.6k
views
p.adjust function fdr and BH
fdr BH
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 10
3
votes
5
replies
1.5k
views
rice annotation package
rice annotation package
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 10
0
votes
4
replies
698
views
rice affymetrix qc() function
affymetrix qc
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 10
2
votes
4
replies
1.0k
views
T-test in limma
limma t test
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 10
2
votes
2
replies
1.4k
views
Can I ask questions on packages from CRAN?
package from CRAN
updated 6.7 years ago by ★ 6.8k • written 6.7 years ago by ▴ 10
0
votes
0
replies
650
views
ggplot2 map color coded image with gene expression values.
ggplot2 choropleth maps
6.8 years ago zhang.jianhai ▴ 10
2
votes
4
replies
1.1k
views
package "isa2", function isa.iterate()
source code isa.iterate()
updated 6.9 years ago by ▴ 110 • written 6.9 years ago by ▴ 10
2
votes
8
replies
1.1k
views
package eisa: object 'ath1121501ENTREZID' not found
object 'ath1121501ENTREZID' not found
updated 6.9 years ago by ★ 3.9k • written 6.9 years ago by ▴ 10
2
votes
7
replies
1.6k
views
Package gcrma: unused argument (validate = FALSE)
gcrma
updated 6.9 years ago by ★ 3.9k • written 6.9 years ago by ▴ 10
0
votes
0
replies
1.1k
views
edgeR: mapping among ENSEMBL Enrtez and RefSeq.
mapping among ENSEMBL Enrtez and RefSeq.
7.0 years ago zhang.jianhai ▴ 10
1
vote
2
replies
901
views
How to retrieve all logFCs fom "glmQLFTest()" output-edgeR?
edgeR "glmQLFTest()"
7.0 years ago zhang.jianhai ▴ 10
1
vote
3
replies
2.1k
views
edgeR multiple coeff in "lrt <- glmLRT(fit, coef=)"
edger
7.0 years ago zhang.jianhai ▴ 10
1
vote
3
replies
3.3k
views
Meaning of multiple coef in topTable, limma.
toptable coef
7.0 years ago zhang.jianhai ▴ 10
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