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Limma-Voom - Time series experiment with one group (duplicateCorrelation() function)
voom duplicateCorrelation() timeseries limma
updated 17 months ago by 45k • written 17 months ago by ▴ 10
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213
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 17 months ago by 36k • written 17 months ago by ▴ 10
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1
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2.3k
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Comment: Comment: DESeq2 model - How to test case/control time course model when taking account wi
17 months ago heikki.sarin ▴ 10
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1
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761
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Comment: C: RNA-seq: Time-course data normalisation with TPM
4.2 years ago heikki.sarin ▴ 10
2
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3
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761
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RNA-seq: Time-course data normalisation with TPM
rna-seq normalization deseq2 TPM
updated 4.2 years ago by 36k • written 4.2 years ago by ▴ 10
1
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1
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2.0k
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goseq: In pcls(G) : initial point very close to some inequality constraints
goseq warning message pwf mgcv
updated 4.7 years ago by ▴ 310 • written 4.8 years ago by ▴ 10
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.8 years ago heikki.sarin ▴ 10
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3.1k
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Comment: C: DESeq2: How to manually perform filtering and outlier detection?
4.8 years ago heikki.sarin ▴ 10
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.8 years ago heikki.sarin ▴ 10
1
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3
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3.1k
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DESeq2: How to manually perform filtering and outlier detection?
deseq2 filtering outliers count outliers
updated 4.8 years ago by 13k • written 4.8 years ago by ▴ 10
0
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1
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1.5k
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RUVseq: How to implement to more complex time-course model?
ruvseq deseq2 model.matrix confounders
updated 4.8 years ago by ▴ 890 • written 4.8 years ago by ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: Dealing with (blood) contamination in RNA-seq data
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: Dealing with (blood) contamination in RNA-seq data
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: Dealing with (blood) contamination in RNA-seq data
4.8 years ago heikki.sarin ▴ 10
0
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1
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1.2k
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limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma voom edgeR toptable output
updated 4.8 years ago by ★ 27k • written 4.8 years ago by ▴ 10
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1.3k
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Comment: C: edgeR: How to set model for glmQLFTest in time-course experiment (compared to gl
4.8 years ago heikki.sarin ▴ 10
0
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1
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1.3k
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Comment: C: edgeR: How to set model for glmQLFTest in time-course experiment (compared to gl
4.8 years ago heikki.sarin ▴ 10
0
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1
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1.4k
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Comment: C: edgeR : How to test differential exon expression on case/control study across al
updated 4.8 years ago by 45k • written 4.8 years ago by ▴ 10
0
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1
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1.3k
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Comment: C: edgeR: How to set model for glmQLFTest in time-course experiment (compared to gl
4.8 years ago heikki.sarin ▴ 10
0
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1
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1.3k
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Comment: C: edgeR: How to set model for glmQLFTest in time-course experiment (compared to gl
4.8 years ago heikki.sarin ▴ 10
4
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8
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1.3k
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edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
edgeR edger "glmqlftest()" timecourse model
updated 4.8 years ago by 7.8k • written 4.8 years ago by ▴ 10
5
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5
replies
1.4k
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edgeR : How to test differential exon expression on case/control study across all time points when accounting for the within subject variability?
egdeR multiple time points model.matrix differential exon usage model
4.8 years ago heikki.sarin ▴ 10
0
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1
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1.4k
views
Comment: C: edgeR : How to test differential exon usage on case/control study across all tim
updated 4.8 years ago by 45k • written 4.8 years ago by ▴ 10
0
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0
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837
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How construct a model for case-control time-course experiment in DEXseq?
dexseq timecourse model.matrix model
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.8 years ago heikki.sarin ▴ 10
0
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1
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1.1k
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Proper dataset form and model for DEXeq analysis
dexseq rna-seq model.matrix model
updated 4.8 years ago by 36k • written 4.8 years ago by ▴ 10
0
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0
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1.9k
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Comment: C: GOseq warning message.
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.8 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.9 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.9 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.9 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.9 years ago heikki.sarin ▴ 10
0
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1
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2.3k
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Comment: C: DESeq2 model - How to test case/control time course model when taking account wi
4.9 years ago heikki.sarin ▴ 10
5
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27
replies
2.3k
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DESeq2 model - How to test case/control time course model when taking account within sample variability?
deseq2 multiple time points time course casecontrol model design
updated 17 months ago by 36k • written 4.9 years ago by ▴ 10
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