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questions
0
votes
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replies
649
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Storey's qvalue and interpreting p-value histogram
qvalue
2.2 years ago
mikhael.manurung
▴ 270
1
vote
1
reply
657
views
Input format for `combinations` in `hashedDrops`
DropletUtils
updated 2.3 years ago by
Aaron Lun
★ 28k • written 2.3 years ago by
mikhael.manurung
▴ 270
1
vote
5
replies
1.1k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
mikhael.manurung
▴ 270
0
votes
0
replies
633
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.1 years ago
mikhael.manurung
▴ 270
0
votes
3
replies
829
views
Most (90%) DE genes of a contrast were upregulated: implication on the assumptions of TMM-normalisation?
limma
edger
normalization
updated 4.8 years ago by
Gordon Smyth
50k • written 4.8 years ago by
mikhael.manurung
▴ 270
5
votes
3
replies
2.1k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 5.0 years ago by
Peter Langfelder
★ 3.0k • written 5.0 years ago by
mikhael.manurung
▴ 270
2
votes
4
replies
917
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
mikhael.manurung
▴ 270
5
votes
6
replies
1.5k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
mikhael.manurung
▴ 270
5
votes
5
replies
1.4k
views
Design and Contrast Matrix for Linear Model. To Combine or not to Combine?
limma
design and contrast matrix
design matrix
contrast matrix
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
mikhael.manurung
▴ 270
6
votes
5
replies
2.1k
views
Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
limma
rna-seq
mixed model
repeated measures
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
mikhael.manurung
▴ 270
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