Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
663
views
ACMG Annotations for Variants in R
ACMG SNP
22 months ago hamza_karakurt ▴ 50
0
votes
0
replies
612
views
ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli alterna AlternativeSplicing
2.2 years ago hamza_karakurt ▴ 50
0
votes
0
replies
1.0k
views
Comment: Comment: ASpli error message
2.2 years ago hamza_karakurt ▴ 50
0
votes
0
replies
1.0k
views
Comment: Comment: ASpli error message
2.2 years ago hamza_karakurt ▴ 50
0
votes
0
replies
771
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
scater singlecell scran BatchEffect
3.5 years ago hamza_karakurt ▴ 50
2
votes
0
replies
513
views
Quality Metrics for Graph Clustering for Biological Networks
R protein-interaction networks network
3.9 years ago hamza_karakurt ▴ 50
2
votes
1
reply
2.0k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq scater scran rna-seq MNN
updated 4.6 years ago by ★ 28k • written 4.6 years ago by ▴ 50
0
votes
1
reply
837
views
emptyDrops result is full NAs
scran dropletUtils scater scRNA-Seq
4.9 years ago hamza_karakurt ▴ 50
0
votes
1
reply
5.8k
views
Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.0 years ago hamza_karakurt ▴ 50
0
votes
2
replies
2.3k
views
Comment: C: Usage of doubletCells() function before or after the batch correction?
5.1 years ago hamza_karakurt ▴ 50
8
votes
4
replies
2.3k
views
Usage of doubletCells() function before or after the batch correction?
scater scran scRNA-Seq doubletCells
updated 5.1 years ago by ★ 28k • written 5.1 years ago by ▴ 50
0
votes
1
reply
1.8k
views
Comment: C: Using SC3 with batch corrected MNN values
5.1 years ago hamza_karakurt ▴ 50
0
votes
1
reply
1.8k
views
Comment: C: Using SC3 with batch corrected MNN values
5.1 years ago hamza_karakurt ▴ 50
4
votes
5
replies
1.8k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.1 years ago by ▴ 150 • written 5.1 years ago by ▴ 50
1
vote
2
replies
1.4k
views
Dunn Index for Clusters from scRNA-Seq
scRNA-Seq clustering scater scran dunn index
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 50
5
votes
5
replies
5.8k
views
Differential Expression Analysis between conditions of single cell RNA-Seq
deseq2 scRNA-Seq RNA-Seq differential expression analysis
updated 5.2 years ago by 42k • written 5.2 years ago by ▴ 50
0
votes
1
reply
1.4k
views
Comment: C: Modularity values of clusters and Differential Expression in scRNA-Seq
5.2 years ago hamza_karakurt ▴ 50
0
votes
1
reply
1.4k
views
Comment: C: Modularity values of clusters and Differential Expression in scRNA-Seq
5.2 years ago hamza_karakurt ▴ 50
2
votes
5
replies
1.4k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 50
3
votes
3
replies
1.6k
views
Enrichment Analysis with only GeneSymbols
R GSEA rna-seq scRna-Seq
updated 5.2 years ago by ★ 3.0k • written 5.2 years ago by ▴ 50
0
votes
0
replies
3.8k
views
Comment: C: Adding labels on clusters in a t-SNE plot and changing colors
5.2 years ago hamza_karakurt ▴ 50
2
votes
5
replies
3.8k
views
Adding labels on clusters in a t-SNE plot and changing colors
scran scater Rtsne ggplot2 scRNA-Seq
updated 20 months ago by ▴ 60 • written 5.2 years ago by ▴ 50
0
votes
0
replies
2.3k
views
Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.2 years ago hamza_karakurt ▴ 50
0
votes
1
reply
2.3k
views
Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.2 years ago hamza_karakurt ▴ 50
2
votes
4
replies
2.3k
views
Silhouette Plots for Clustering Quality (Multiple Algorithm)
scRNA-Seq RNA-Seq Clustering Silhouette Plot
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 50
0
votes
1
reply
2.5k
views
Deconvolution Method in Seurat and convert from SingleCellExperiment
scater seurat singlecellexperiment rnaseq
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 50
0
votes
0
replies
1.6k
views
Comment: C: Seurat to SingleCellExperiment Converting error in MAC
5.5 years ago hamza_karakurt ▴ 50
3
votes
2
replies
1.6k
views
Seurat to SingleCellExperiment Converting error in MAC
singlecellexperiment single-cell rnaseq
updated 5.5 years ago by ★ 13k • written 5.5 years ago by ▴ 50
0
votes
1
reply
2.5k
views
Comment: C: newSCESet and SingleCellExperiment basic differences and TMM Normalization
5.6 years ago hamza_karakurt ▴ 50
1
vote
5
replies
2.5k
views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
singlecellexperiment single-cell rnaseq seurat scater
5.6 years ago hamza_karakurt ▴ 50
30 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6