Biostar Batch Correction

Showing : Batch Correction • reset

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739

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scrna-seq integration batch correction

updated 3.0 years ago by Aaron Lun ★ 28k • written 3.0 years ago by p.joshi ▴ 30

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522

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methylation ComBat Linear models batch correction AIC

updated 3.1 years ago by Kevin Blighe 3.7k • written 3.1 years ago by lucasmiranda42 • 0

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357

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DESeq2 batch correction

updated 3.2 years ago by James W. MacDonald 62k • written 3.2 years ago by MT ▴ 10

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510

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Diffbind ATAC batch correction blocking factor

updated 3.5 years ago by Rory Stark ★ 4.6k • written 3.5 years ago by rm1238 • 0

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604

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deseq2 differential expression batch correction design

updated 3.6 years ago by Michael Love 39k • written 3.6 years ago by wunderl ▴ 30

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817

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deseq2 differential expression batch correction

updated 3.6 years ago by Michael Love 39k • written 3.6 years ago by wunderl ▴ 30

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1.1k

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SC3 Scater Scran scRNA-Seq Batch Correction

updated 3.8 years ago by Vladimir Kiselev ▴ 150 • written 3.8 years ago by hamza_karakurt ▴ 50

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Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…

Answer: MA plot by Nathalie • 0

Thank you very much for your help and comments. There is errors in my file. BaseMean is BaseMeanLog2. I don't know how insert a file.

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Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

Answer: MA plot

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